Gene detail

Detailed information of evm.model.Ap6.1281.1.5f15dec7 in Astrangia poculata

Genomic Location: Ap6:12600833...12621112
NR annotation: XP_020621835.1, pre-mRNA 3' end processing protein WDR33-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1281.1.5f15dec7

atgatgttccagcagccccaccaacaatctctaaagttcgccccaaagccgccaacatcgtccccagttcaaccagcagcatcagccgactcgcaagatgacaagggctttcgacagcccatcacgtttgatggaaaacggatgagaaaggctgttatgcgtaaaactgtcgattataactcttctgttgttaaacagatcgagaacagaaaatggtttaaagatttaagcaaaagaactgcaatgcagcctgatgacaccttttcttcagatgtttatccaccgggctgtcttttggacaatcctattaacgctgttacaacaaagtttgtgagaacatctactaataaactgagatgtccaatattttgtgttgcatggactcctgaaggacgtcgtctggtgacaggagcatccagtggtgaatttactctgtggaatggattgacatttaattttgaaacaatattgcaagcacatgacagtccagtgcgttcaatggtttggagtcatgcagataactggctattgtcgtctgatcatggtggttacatcaagtactggcagtccaacatgaataacgtcaaaatgtacgaggcccacaaagaacccattcgaggattaagcttctcacccacagacaataagtttgcatcttgttcagatgatggcttggtgaaaatatgggatttttaccgctgcacagaggagagagtactgagaggacatggagctgatgttaaatgtgtggattggcatccaaccaaaagtcttgttgtgtctggcagcaaggacagtcagcaaccaatcaaactgtgggacccccgcacagcatatgcactaactactctgcatgctcacaagagcacagtgatgcaaattaaatggaatcagaatggacactggttactaacagcatcacgtgatcatctgttgaagttgtttgatattcgtatgatgaaagaaatgcaaacattccgaggccataaaagggaagcgacagcaatcagctggcatcctatccatgaatctctgtttgtgagtggtggatcagatggatccatgatgttttgggtggttggagctgagaaggatgttggtaatatggagatggctcatgagggaatggtgtggagtttagcttggcatccactgggacatattctgtgttcaggatccaatgaccactccagtaaattttggactcgcaaccgacttggtgacaggatgagagataaatacaatctgaacattctggacacagaggatgacactgatggtgaccacccaggcgttataagtacagctattcctggaatggatacagcattaaacccagctgaagactttccagatattgatagatatgacttgggagaaaaaggcccttcatttggccttggcaactcatcagcaaacaagatcactcccactcgaccaaggcagtcagaaccacaaaatcctggattcactctgcctaactttaaaaacagtccagccattccaggctttggctctcttggagaaattaacacaaatgttgaaaatgggaattcaggtttacggccagatgctccaccatttaaacctggagagagaaaccatgtgggaccatttgagcccccagctcctcagaggcttgtgcagcccaatacatttaaacctgagaaaggaccaaggccttttgatggacctcaaggggaccaatttgctcctggaagacccagaggggactttgaagcaggaggaccacggagggagtcttgggatgagcctaggggtcctcctggtgattttaaaccaccgaattggcgtgagcagggctctaatgattttggacaccatggtagggatttcaggccagatgatggtgggccaaatttcagagggcctcctggagataggtttcatgggcctgataggcagggcatcttagggtcacctccagggcctcctgacatggactcacggcctggattacttggtgctccgccagcacaacagccccagcaactgatgcaaggaccacctggaccccagggaggtcccacagggcaggcaagaaatgacttccctcatcaaggttcagggcctaacaacgaccccagacaagaccagggaccttggcgaccacaccctaatgaacgtgaaggagatagaaatgaactatcgccaagatttgacatgggcgatccccggggcgtaaggcatccaaatgacctcagttcaaggggctttagaaggggtgggcaaaggggacggggccatgactcacctccacgtcatggtcccgagatggaagggccaaaccaaagggctcatccatatattaccaagcttagttcaagaggcttcaagagtaatcctcaaggaatgcatgagaatagggatcctcgctggggtggacccacagatgagcccccacaaggaaggggcccagaggagccacatggtaaggagtgctttatctgttatcaatag

Transcript

evm.model.Ap6.1281.1.5f15dec7

ATGATGTTCCAGCAGCCCCACCAACAATCTCTAAAGTTCGCCCCAAAGCCGCCAACATCGTCCCCAGTTCAACCAGCAGCATCAGCCGACTCGCAAGATGACAAGGGCTTTCGACAGCCCATCACGTTTGATGGAAAACGGATGAGAAAGGCTGTTATGCGTAAAACTGTCGATTATAACTCTTCTGTTGTTAAACAGATCGAGAACAGAAAATGGTTTAAAGATTTAAGCAAAAGAACTGCAATGCAGCCTGATGACACCTTTTCTTCAGATGTTTATCCACCGGGCTGTCTTTTGGACAATCCTATTAACGCTGTTACAACAAAGTTTGTGAGAACATCTACTAATAAACTGAGATGTCCAATATTTTGTGTTGCATGGACTCCTGAAGGACGTCGTCTGGTGACAGGAGCATCCAGTGGTGAATTTACTCTGTGGAATGGATTGACATTTAATTTTGAAACAATATTGCAAGCACATGACAGTCCAGTGCGTTCAATGGTTTGGAGTCATGCAGATAACTGGCTATTGTCGTCTGATCATGGTGGTTACATCAAGTACTGGCAGTCCAACATGAATAACGTCAAAATGTACGAGGCCCACAAAGAACCCATTCGAGGATTAAGCTTCTCACCCACAGACAATAAGTTTGCATCTTGTTCAGATGATGGCTTGGTGAAAATATGGGATTTTTACCGCTGCACAGAGGAGAGAGTACTGAGAGGACATGGAGCTGATGTTAAATGTGTGGATTGGCATCCAACCAAAAGTCTTGTTGTGTCTGGCAGCAAGGACAGTCAGCAACCAATCAAACTGTGGGACCCCCGCACAGCATATGCACTAACTACTCTGCATGCTCACAAGAGCACAGTGATGCAAATTAAATGGAATCAGAATGGACACTGGTTACTAACAGCATCACGTGATCATCTGTTGAAGTTGTTTGATATTCGTATGATGAAAGAAATGCAAACATTCCGAGGCCATAAAAGGGAAGCGACAGCAATCAGCTGGCATCCTATCCATGAATCTCTGTTTGTGAGTGGTGGATCAGATGGATCCATGATGTTTTGGGTGGTTGGAGCTGAGAAGGATGTTGGTAATATGGAGATGGCTCATGAGGGAATGGTGTGGAGTTTAGCTTGGCATCCACTGGGACATATTCTGTGTTCAGGATCCAATGACCACTCCAGTAAATTTTGGACTCGCAACCGACTTGGTGACAGGATGAGAGATAAATACAATCTGAACATTCTGGACACAGAGGATGACACTGATGGTGACCACCCAGGCGTTATAAGTACAGCTATTCCTGGAATGGATACAGCATTAAACCCAGCTGAAGACTTTCCAGATATTGATAGATATGACTTGGGAGAAAAAGGCCCTTCATTTGGCCTTGGCAACTCATCAGCAAACAAGATCACTCCCACTCGACCAAGGCAGTCAGAACCACAAAATCCTGGATTCACTCTGCCTAACTTTAAAAACAGTCCAGCCATTCCAGGCTTTGGCTCTCTTGGAGAAATTAACACAAATGTTGAAAATGGGAATTCAGGTTTACGGCCAGATGCTCCACCATTTAAACCTGGAGAGAGAAACCATGTGGGACCATTTGAGCCCCCAGCTCCTCAGAGGCTTGTGCAGCCCAATACATTTAAACCTGAGAAAGGACCAAGGCCTTTTGATGGACCTCAAGGGGACCAATTTGCTCCTGGAAGACCCAGAGGGGACTTTGAAGCAGGAGGACCACGGAGGGAGTCTTGGGATGAGCCTAGGGGTCCTCCTGGTGATTTTAAACCACCGAATTGGCGTGAGCAGGGCTCTAATGATTTTGGACACCATGGTAGGGATTTCAGGCCAGATGATGGTGGGCCAAATTTCAGAGGGCCTCCTGGAGATAGGTTTCATGGGCCTGATAGGCAGGGCATCTTAGGGTCACCTCCAGGGCCTCCTGACATGGACTCACGGCCTGGATTACTTGGTGCTCCGCCAGCACAACAGCCCCAGCAACTGATGCAAGGACCACCTGGACCCCAGGGAGGTCCCACAGGGCAGGCAAGAAATGACTTCCCTCATCAAGGTTCAGGGCCTAACAACGACCCCAGACAAGACCAGGGACCTTGGCGACCACACCCTAATGAACGTGAAGGAGATAGAAATGAACTATCGCCAAGATTTGACATGGGCGATCCCCGGGGCGTAAGGCATCCAAATGACCTCAGTTCAAGGGGCTTTAGAAGGGGTGGGCAAAGGGGACGGGGCCATGACTCACCTCCACGTCATGGTCCCGAGATGGAAGGGCCAAACCAAAGGGCTCATCCATATATTACCAAGCTTAGTTCAAGAGGCTTCAAGAGTAATCCTCAAGGAATGCATGAGAATAGGGATCCTCGCTGGGGTGGACCCACAGATGAGCCCCCACAAGGAAGGGGCCCAGAGGAGCCACATGGTAAGGAGTGCTTTATCTGTTATCAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K4P0	pre-mRNA 3' end processing protein WDR33 OS=Mus musculus OX=10090 GN=Wdr33 PE=1 SV=1
Q9C0J8	pre-mRNA 3' end processing protein WDR33 OS=Homo sapiens OX=9606 GN=WDR33 PE=1 SV=2
U4PCM1	pre-mRNA 3' end processing protein pfs-2 OS=Caenorhabditis elegans OX=6239 GN=pfs-2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005214 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045245 all species →	Family	Pre-mRNA 3' end processing protein Pfs2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22836 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005847 all species →	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0031124 all species →	Biological Process	mRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15542	PFS2; polyadenylation factor subunit 2	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.