Genomic Location: Ap6:13264701...13265174
NR annotation: XP_020625630.1, glutathione gamma-glutamylcysteinyltransferase-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.1357 |
| Transcript |
| evm.model.Ap6.1357 |
| Protein |
| evm.model.Ap6.1357 |
| UniProt accession | Description |
|---|---|
| A5JYS0 | Glutathione gamma-glutamylcysteinyltransferase OS=Caenorhabditis elegans OX=6239 GN=pcs-1 PE=1 SV=1 |
| Q9S7Z3 | Glutathione gamma-glutamylcysteinyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=PCS1 PE=1 SV=1 |
| Q2QKL5 | Glutathione gamma-glutamylcysteinyltransferase 3 OS=Lotus japonicus OX=34305 GN=PCS3 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002935 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05023 all species → | Phytochelatin | Phytochelatin synthase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040409 all species → | Family | Phytochelatin synthase | Interproscan |
| IPR038765 all species → | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| IPR007719 all species → | Domain | Phytochelatin synthase, N-terminal catalytic domain | Interproscan |
| IPR038156 all species → | Homologous_superfamily | Phytochelatin synthase, N-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR33447 all species → | GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0010273 all species → | Biological Process | detoxification of copper ion | Interproscan |
| GO:0016756 all species → | Molecular Function | glutathione gamma-glutamylcysteinyltransferase activity | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0046938 all species → | Biological Process | phytochelatin biosynthetic process | Interproscan |
| GO:0098849 all species → | Biological Process | cellular detoxification of cadmium ion | Interproscan |
| GO:0010038 all species → | Biological Process | response to metal ion | Interproscan |
evm.model.Ap6.1357.Transcript abundance of evm.model.Ap6.1357 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
