Gene detail

Detailed information of evm.model.Ap6.136 in Astrangia poculata

Genomic Location: Ap6:1184406...1203403
NR annotation: KAJ7393505.1, multiple epidermal growth factor-like domains protein 6 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.136

atgcacggatcctacagatgtgaatgtgcaaatggttatatggtagcacctggaaacccaaggagatgtctggacctggacgaatgtaaactgggcatttctggttgcagtcagggctgtcagaataccctgggttcttatcgttgtttttgtcgcagaccaggttatgttttggattcagatcagcgatcgtgcaaagtttttcttgttttcacggaacgtccaccagcgggttccaatttctttgaagacacaagtattgcacagcggagagaattacaaggaattcaagcctgcccccctgggtatataggtcccggatgtcgtttgacatgtgacgattgtcaaaatggcgcccggtgtgacatcagaaatggacaatgtctttgccctcctggttgggcaggagtcttatgcgatgatccctgtccaaatggatcatttggaaaggactgtaggaacaagtgcttgtgtaagaatgatgcgcggtgtgatcacgtgactggtgcgtgtacttgtcagccgggattcataggaaagctgtgcgaagaagattgtcctgctgggttctatggagtcgggtgtaaggagaagtgcgcatgcgttcacatggaaccttgtcacccagtgaccggcaggtgtcagtgtgatccaggattctttggggcccgctgtgccaaagcgtgcccatcagggtccttcggagcagggtgcaaggaaatgtgcaaatgccgagttgatcacacagaaaggtgccaccctgggaatggcgcatgtgactgcaagcctggttaccaaggaaaatactgcatagacagatgtcctaagggaagctatggtaaacactgcctacgaacatgcaactgtcctgagtctgggagttgtgatcacgtggacggcacgtgtgacgtaatgtgtcctgcaggtctgaccggaccaaagtgtcagacaggagtgggattcgaacccacgcctccattcggagaccagaacactcatcaccattcagatgagaaaaaaaaatccagtttgtcaggagtgggattcgaacccacgcctccatttggagaccagaacactcatcaccattcagatgtatgcgccgaaggtacgtttggcctcggatgcagtcagcggtgtcagtgtagtgatggcgtgacatgtgatcccgtgtcaggctcgtgtatctgtcccatggggaaaatgggttctaagtgtgacaaagcatgccccgaaggccagtacggctttaactgtgaccaggtttgcgactgcgcagctggaatcaagtgtgacgccatgtcaggcgcatgcgtgtgtgcggaggggaggactggcagacgttgtgatcgattttgtccggctgggacatacggccataagtgtttgcacagatgtcagtgtcttggtatggcccgctgtgacccggtcagcggtgaatgcaactgtcctccaggaaggactggaacgaggtgcgagaaagtctgccagcatggaacattcggcaagaagtgtcaaaaacgttgtgactgtcaccctggtgttcgttgccatccggtcagcggcaagtgcatttgtccaaaagggaggactggaaacaagtgtgacgaagtttgtccagaaggctcctatggtagcaaatgcgctcagcggtgtcgctgttttgaaaatgcgcactgtgatccagtggaaggaacttgtcagtgtccatcagggaggactgggaaatactgtcaagaagtttgcccacgtgacacatacgggatagaatgcggtcagcggtgtgattgcgtcaatgccacttgttctcctgaaaccggggaatgccagtgtcctccagggagaatggggccgagatgtgacagaggttgtcctcatggttactttggacagaactgtagccagtcatgtggttgtcatgggaactcgtcttgtgacgttgtgatgggcaggtgtcactgcagtgctggcaaaatgggagaatattgtgatcaagattgtcctaacgggacttacggctcaggttgcagtcaacggtgtacctgtgagcagcacgccccgtgtgatgtaatgacaggcagatgtttgtgtccaccgcagacatggggccaaaggtgcgagaaagattgtgaatgtaagcataactcaacctgtagccccgtgacgggattatgtatctgtgctccgggttggatcggcaagacatgtgagaaaaaatgccctgaaggattctatggagtaaactgtatcaagacgtgctcttgtcctaaggaagcctcttgtgatcacgtgaacggaaactgtatttgccctgctggtctgtacggagaggagtgtgagaaaaagtgtccaaaaggcttctttgggaagaactgttccaagaagtgtaactgcaccaaatttgaaatgtgtaatgccgtgactggccactgcaaaagagtttgtccagctggtaaatatggcgttaattgttcgctcagctgcaagtgccctcgttcggcgatatgtgatccgtacacagccgaatgtctctgtaaacccgggcgtcaagggacagcatgccgacagggttgccttaaaggtacgtacggacgcaactgtatcttcaactgcacatgctcggaaaactccgagtgtgactctgagacgggagaatgccgatgtcacgtgggctggataggaagcaggtgtgaacacgtttgtccagctggaacatttggtctcggctgtcaaaagaaatgttcctgctataacggcctgtgcgatcacgtgaatggaaaatgccactgtcatccgggataccaaggagtacgatgcgaaagagaatgtccgcgcggtttctttggtcaagactgtcagtttgaatgcacctgcaaaaatgacgccatatgtgatcatgtgaatggaaaatgccactgcggattgggatacactggagccaactgtgaaaaagaatgctcccctgagaattacggtcttaactgtgaacagaagtgtgaatgtaaaaacggagcaaggtgtgacaagatcactggttgttgtttttgtcctccggggtggtatggggacaaatgtcaatatggttgtcccccgggacgctatggcatgtactgtactaaacactgcagatgtatgaatggagggtcatgtgacccagcatccggggaatgttactgtaccgaagggtggactgggagagactgtagcaaagcgtgtcctcttggacggtatggcttcgattgtttgaccaactgctcatgcgccaactcatcaatgtgtaaccccaggactggacggtgcgagtgtgagcccgggaggactggacctgactgtggccaagaatgtggtgacaagtacggtcctggatgtgagctccagtgctcttgtggtcagggaggccagtgtgatccgctgaccggaaaatgcaagtgtagacctggatggactggacccgaatgtagagaaaaaaacccggaaaaagtaccatttaacgacgaccatttgtttacaatcaattga

Transcript

evm.model.Ap6.136

ATGCACGGATCCTACAGATGTGAATGTGCAAATGGTTATATGGTAGCACCTGGAAACCCAAGGAGATGTCTGGACCTGGACGAATGTAAACTGGGCATTTCTGGTTGCAGTCAGGGCTGTCAGAATACCCTGGGTTCTTATCGTTGTTTTTGTCGCAGACCAGGTTATGTTTTGGATTCAGATCAGCGATCGTGCAAAGTTTTTCTTGTTTTCACGGAACGTCCACCAGCGGGTTCCAATTTCTTTGAAGACACAAGTATTGCACAGCGGAGAGAATTACAAGGAATTCAAGCCTGCCCCCCTGGGTATATAGGTCCCGGATGTCGTTTGACATGTGACGATTGTCAAAATGGCGCCCGGTGTGACATCAGAAATGGACAATGTCTTTGCCCTCCTGGTTGGGCAGGAGTCTTATGCGATGATCCCTGTCCAAATGGATCATTTGGAAAGGACTGTAGGAACAAGTGCTTGTGTAAGAATGATGCGCGGTGTGATCACGTGACTGGTGCGTGTACTTGTCAGCCGGGATTCATAGGAAAGCTGTGCGAAGAAGATTGTCCTGCTGGGTTCTATGGAGTCGGGTGTAAGGAGAAGTGCGCATGCGTTCACATGGAACCTTGTCACCCAGTGACCGGCAGGTGTCAGTGTGATCCAGGATTCTTTGGGGCCCGCTGTGCCAAAGCGTGCCCATCAGGGTCCTTCGGAGCAGGGTGCAAGGAAATGTGCAAATGCCGAGTTGATCACACAGAAAGGTGCCACCCTGGGAATGGCGCATGTGACTGCAAGCCTGGTTACCAAGGAAAATACTGCATAGACAGATGTCCTAAGGGAAGCTATGGTAAACACTGCCTACGAACATGCAACTGTCCTGAGTCTGGGAGTTGTGATCACGTGGACGGCACGTGTGACGTAATGTGTCCTGCAGGTCTGACCGGACCAAAGTGTCAGACAGGAGTGGGATTCGAACCCACGCCTCCATTCGGAGACCAGAACACTCATCACCATTCAGATGAGAAAAAAAAATCCAGTTTGTCAGGAGTGGGATTCGAACCCACGCCTCCATTTGGAGACCAGAACACTCATCACCATTCAGATGTATGCGCCGAAGGTACGTTTGGCCTCGGATGCAGTCAGCGGTGTCAGTGTAGTGATGGCGTGACATGTGATCCCGTGTCAGGCTCGTGTATCTGTCCCATGGGGAAAATGGGTTCTAAGTGTGACAAAGCATGCCCCGAAGGCCAGTACGGCTTTAACTGTGACCAGGTTTGCGACTGCGCAGCTGGAATCAAGTGTGACGCCATGTCAGGCGCATGCGTGTGTGCGGAGGGGAGGACTGGCAGACGTTGTGATCGATTTTGTCCGGCTGGGACATACGGCCATAAGTGTTTGCACAGATGTCAGTGTCTTGGTATGGCCCGCTGTGACCCGGTCAGCGGTGAATGCAACTGTCCTCCAGGAAGGACTGGAACGAGGTGCGAGAAAGTCTGCCAGCATGGAACATTCGGCAAGAAGTGTCAAAAACGTTGTGACTGTCACCCTGGTGTTCGTTGCCATCCGGTCAGCGGCAAGTGCATTTGTCCAAAAGGGAGGACTGGAAACAAGTGTGACGAAGTTTGTCCAGAAGGCTCCTATGGTAGCAAATGCGCTCAGCGGTGTCGCTGTTTTGAAAATGCGCACTGTGATCCAGTGGAAGGAACTTGTCAGTGTCCATCAGGGAGGACTGGGAAATACTGTCAAGAAGTTTGCCCACGTGACACATACGGGATAGAATGCGGTCAGCGGTGTGATTGCGTCAATGCCACTTGTTCTCCTGAAACCGGGGAATGCCAGTGTCCTCCAGGGAGAATGGGGCCGAGATGTGACAGAGGTTGTCCTCATGGTTACTTTGGACAGAACTGTAGCCAGTCATGTGGTTGTCATGGGAACTCGTCTTGTGACGTTGTGATGGGCAGGTGTCACTGCAGTGCTGGCAAAATGGGAGAATATTGTGATCAAGATTGTCCTAACGGGACTTACGGCTCAGGTTGCAGTCAACGGTGTACCTGTGAGCAGCACGCCCCGTGTGATGTAATGACAGGCAGATGTTTGTGTCCACCGCAGACATGGGGCCAAAGGTGCGAGAAAGATTGTGAATGTAAGCATAACTCAACCTGTAGCCCCGTGACGGGATTATGTATCTGTGCTCCGGGTTGGATCGGCAAGACATGTGAGAAAAAATGCCCTGAAGGATTCTATGGAGTAAACTGTATCAAGACGTGCTCTTGTCCTAAGGAAGCCTCTTGTGATCACGTGAACGGAAACTGTATTTGCCCTGCTGGTCTGTACGGAGAGGAGTGTGAGAAAAAGTGTCCAAAAGGCTTCTTTGGGAAGAACTGTTCCAAGAAGTGTAACTGCACCAAATTTGAAATGTGTAATGCCGTGACTGGCCACTGCAAAAGAGTTTGTCCAGCTGGTAAATATGGCGTTAATTGTTCGCTCAGCTGCAAGTGCCCTCGTTCGGCGATATGTGATCCGTACACAGCCGAATGTCTCTGTAAACCCGGGCGTCAAGGGACAGCATGCCGACAGGGTTGCCTTAAAGGTACGTACGGACGCAACTGTATCTTCAACTGCACATGCTCGGAAAACTCCGAGTGTGACTCTGAGACGGGAGAATGCCGATGTCACGTGGGCTGGATAGGAAGCAGGTGTGAACACGTTTGTCCAGCTGGAACATTTGGTCTCGGCTGTCAAAAGAAATGTTCCTGCTATAACGGCCTGTGCGATCACGTGAATGGAAAATGCCACTGTCATCCGGGATACCAAGGAGTACGATGCGAAAGAGAATGTCCGCGCGGTTTCTTTGGTCAAGACTGTCAGTTTGAATGCACCTGCAAAAATGACGCCATATGTGATCATGTGAATGGAAAATGCCACTGCGGATTGGGATACACTGGAGCCAACTGTGAAAAAGAATGCTCCCCTGAGAATTACGGTCTTAACTGTGAACAGAAGTGTGAATGTAAAAACGGAGCAAGGTGTGACAAGATCACTGGTTGTTGTTTTTGTCCTCCGGGGTGGTATGGGGACAAATGTCAATATGGTTGTCCCCCGGGACGCTATGGCATGTACTGTACTAAACACTGCAGATGTATGAATGGAGGGTCATGTGACCCAGCATCCGGGGAATGTTACTGTACCGAAGGGTGGACTGGGAGAGACTGTAGCAAAGCGTGTCCTCTTGGACGGTATGGCTTCGATTGTTTGACCAACTGCTCATGCGCCAACTCATCAATGTGTAACCCCAGGACTGGACGGTGCGAGTGTGAGCCCGGGAGGACTGGACCTGACTGTGGCCAAGAATGTGGTGACAAGTACGGTCCTGGATGTGAGCTCCAGTGCTCTTGTGGTCAGGGAGGCCAGTGTGATCCGCTGACCGGAAAATGCAAGTGTAGACCTGGATGGACTGGACCCGAATGTAGAGAAAAAAACCCGGAAAAAGTACCATTTAACGACGACCATTTGTTTACAATCAATTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011099 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan
IPR042635 all species →	Family	MEGF10/SREC1/2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24043 all species →	SCAVENGER RECEPTOR CLASS F	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005044 all species →	Molecular Function	scavenger receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24333	MEGF6; multiple epidermal growth factor-like domains protein 6	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.