Gene detail

Detailed information of evm.model.Ap6.1373 in Astrangia poculata

Genomic Location: Ap6:13381519...13386866
NR annotation: XP_020625631.1, uncharacterized protein LOC110063018 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1373

atggagtttagacagaatgaggaatatcttgcctgtgatgagtgtggcaaacaatgtatgtacggcgattgccctgatcatgggccattagaatggattgacgacggccactcagtcagtggagcacagcagaaaaaccaagctagagccaccctccctagtaatctgtaccttatgccttcagcagttggacaaggtcacatgggtgtgtttgccagagcaaggattgaaaaaagggtcatgtttggacccttcaaaggaccaaaacttcctgcaaaggagttgcattttgaagaggggcacagctatatgtacatgtgggatgttttggaaggtggtagggtcagtcacatagtggatggctcagatgaacagaacagcaactggatgagatttgtcaactgtgcacgtgatagcaaagaacaaaacttagtggttgtagagttccgcggggagatttactacaagacatgcatgcctgtggagtctggcagtgagctgctggtgtggtacgatgacagccttgccttgggaagctcaacacagaaagaccagaacagttatgattttgtctgtgacgcttgtggactgtccttcgctgggtcaacctttcttctaaggcacaagttagttcgctgccaaggaacatcagccaaccaggcaagttctgctgaagaccatgaagctcaagcagacgagccaatggattcatccgatcaggagaaagtcaccgaagaggacggagcatcaccttgtgatacagagtcaccgtatgctgcagctcctactggggctactagtaatgaaaacagtgaagctgtcgaggagaatacccaggcaagtagttcccgtgaccaggaggttcaagcagaagagccaagggagccgtcggatatagcgacagctaatgaagaggacgctgcagtggcttgtgatgaagaatcatcgtatgttgtagttcacattgggactactggaagtgaaaacagtagaacagtcatggaggagaattcgtctttttgtgttgtccatgtacaacctgcgcaaagctcagaagagtcaaacacgggaagattaagaaaaggaagacaaggtacgacgcctgtggttaacggtaaaacacaaaaaggagcgaacactcgtaaacgttctgtagagagtgcaggaaaagcaaaacagaccgctagcaaatcagcgtcatcaaaggctcggaaaacgccagcctcaaacggtacaaaagcacccaagaaatcgatgtcctctaagacggcccctgctcggaggaaaaggaaagcagcttctgctgctgatggctcgagacctcaagttaaaaagaagaaagtaactcaatcaaacgaatcccgagggcggaagaaagctaaaaacagtgaacgctctagcacgacgaaaggaaaagcttccagtagtaacaaagatgatgaggatgaaagtgtggaagaaaatagtgcagagacggtatcacccaagtcaaggaaaaaatctaagaagtcgaacaaatcttcatcacctggtgaagaagaggatgcggcagctgaagatggaatagctgaaaagcgacctcgtaagaagaaaccgcgtaaaccaagaaagcctggagacaaagaaagcaaagaggatcctactgacccatccaaaacgctttctcccaccaaaaggaaaaaaactgcgcccgaaaataagccaatatttacttgcgagcagtgtttaagaaggttcaagtggaagtctgcgcttgattaccacatgcgaagtcacacagctgagaaagagttcaagtgtaccttttgcaacaaggggctgtcacagttatcttcgcttaaaaggcatttacgcgtccacagtggcgagaagccgtatgaatgcgaggagtgtggccagagattcgtagagaaaggaaagctcacagttcatctgcgtaaacacactggggaagcgatagagaagaagcacgaagtgattcacactggcaataaaccatttaggtgtgatctttgcggtaaaggctttactcaaccaaactcggtcaaagctcacttgaaagtccatgcaagaaagcgggcacggcttgaaggcagaggtccaggagaggaacaacaagaaagaacgtgcagagatgaagagatgcagacggatggtcaggagggagtagctgagctgcggcggggtgttcctcagagcagcgctcaacgaaatggaatacaggagacaggagtagctgctggtgaaggaaacagaatagaagtaggagtggatggtgtgataacacagcggatggacagagtgcaggaggattcatcacatatacagagccaccaaaacgacggagcggaactgttacatgtacagtcagatagtattcaagcactgcaacccgagcacttacacgtgaacagctctcgggcggatggcttagaacaacaagagatttcttcaggaaatgagacaggacttagaacaattgcaacagaacagttgcagttaagctgcactacaacagatagcactagcgaccaactaaacattgacaatactcttatcaatggaaaagaacttctgcagcttggcagcgcggctcaaagcaatggcgctggacatcaacaggtagaactggctcctagcaatgtgcaagagcaagtccagcttgctgaagggagtgaaacaacacttcttgcgctatag

Transcript

evm.model.Ap6.1373

ATGGAGTTTAGACAGAATGAGGAATATCTTGCCTGTGATGAGTGTGGCAAACAATGTATGTACGGCGATTGCCCTGATCATGGGCCATTAGAATGGATTGACGACGGCCACTCAGTCAGTGGAGCACAGCAGAAAAACCAAGCTAGAGCCACCCTCCCTAGTAATCTGTACCTTATGCCTTCAGCAGTTGGACAAGGTCACATGGGTGTGTTTGCCAGAGCAAGGATTGAAAAAAGGGTCATGTTTGGACCCTTCAAAGGACCAAAACTTCCTGCAAAGGAGTTGCATTTTGAAGAGGGGCACAGCTATATGTACATGTGGGATGTTTTGGAAGGTGGTAGGGTCAGTCACATAGTGGATGGCTCAGATGAACAGAACAGCAACTGGATGAGATTTGTCAACTGTGCACGTGATAGCAAAGAACAAAACTTAGTGGTTGTAGAGTTCCGCGGGGAGATTTACTACAAGACATGCATGCCTGTGGAGTCTGGCAGTGAGCTGCTGGTGTGGTACGATGACAGCCTTGCCTTGGGAAGCTCAACACAGAAAGACCAGAACAGTTATGATTTTGTCTGTGACGCTTGTGGACTGTCCTTCGCTGGGTCAACCTTTCTTCTAAGGCACAAGTTAGTTCGCTGCCAAGGAACATCAGCCAACCAGGCAAGTTCTGCTGAAGACCATGAAGCTCAAGCAGACGAGCCAATGGATTCATCCGATCAGGAGAAAGTCACCGAAGAGGACGGAGCATCACCTTGTGATACAGAGTCACCGTATGCTGCAGCTCCTACTGGGGCTACTAGTAATGAAAACAGTGAAGCTGTCGAGGAGAATACCCAGGCAAGTAGTTCCCGTGACCAGGAGGTTCAAGCAGAAGAGCCAAGGGAGCCGTCGGATATAGCGACAGCTAATGAAGAGGACGCTGCAGTGGCTTGTGATGAAGAATCATCGTATGTTGTAGTTCACATTGGGACTACTGGAAGTGAAAACAGTAGAACAGTCATGGAGGAGAATTCGTCTTTTTGTGTTGTCCATGTACAACCTGCGCAAAGCTCAGAAGAGTCAAACACGGGAAGATTAAGAAAAGGAAGACAAGGTACGACGCCTGTGGTTAACGGTAAAACACAAAAAGGAGCGAACACTCGTAAACGTTCTGTAGAGAGTGCAGGAAAAGCAAAACAGACCGCTAGCAAATCAGCGTCATCAAAGGCTCGGAAAACGCCAGCCTCAAACGGTACAAAAGCACCCAAGAAATCGATGTCCTCTAAGACGGCCCCTGCTCGGAGGAAAAGGAAAGCAGCTTCTGCTGCTGATGGCTCGAGACCTCAAGTTAAAAAGAAGAAAGTAACTCAATCAAACGAATCCCGAGGGCGGAAGAAAGCTAAAAACAGTGAACGCTCTAGCACGACGAAAGGAAAAGCTTCCAGTAGTAACAAAGATGATGAGGATGAAAGTGTGGAAGAAAATAGTGCAGAGACGGTATCACCCAAGTCAAGGAAAAAATCTAAGAAGTCGAACAAATCTTCATCACCTGGTGAAGAAGAGGATGCGGCAGCTGAAGATGGAATAGCTGAAAAGCGACCTCGTAAGAAGAAACCGCGTAAACCAAGAAAGCCTGGAGACAAAGAAAGCAAAGAGGATCCTACTGACCCATCCAAAACGCTTTCTCCCACCAAAAGGAAAAAAACTGCGCCCGAAAATAAGCCAATATTTACTTGCGAGCAGTGTTTAAGAAGGTTCAAGTGGAAGTCTGCGCTTGATTACCACATGCGAAGTCACACAGCTGAGAAAGAGTTCAAGTGTACCTTTTGCAACAAGGGGCTGTCACAGTTATCTTCGCTTAAAAGGCATTTACGCGTCCACAGTGGCGAGAAGCCGTATGAATGCGAGGAGTGTGGCCAGAGATTCGTAGAGAAAGGAAAGCTCACAGTTCATCTGCGTAAACACACTGGGGAAGCGATAGAGAAGAAGCACGAAGTGATTCACACTGGCAATAAACCATTTAGGTGTGATCTTTGCGGTAAAGGCTTTACTCAACCAAACTCGGTCAAAGCTCACTTGAAAGTCCATGCAAGAAAGCGGGCACGGCTTGAAGGCAGAGGTCCAGGAGAGGAACAACAAGAAAGAACGTGCAGAGATGAAGAGATGCAGACGGATGGTCAGGAGGGAGTAGCTGAGCTGCGGCGGGGTGTTCCTCAGAGCAGCGCTCAACGAAATGGAATACAGGAGACAGGAGTAGCTGCTGGTGAAGGAAACAGAATAGAAGTAGGAGTGGATGGTGTGATAACACAGCGGATGGACAGAGTGCAGGAGGATTCATCACATATACAGAGCCACCAAAACGACGGAGCGGAACTGTTACATGTACAGTCAGATAGTATTCAAGCACTGCAACCCGAGCACTTACACGTGAACAGCTCTCGGGCGGATGGCTTAGAACAACAAGAGATTTCTTCAGGAAATGAGACAGGACTTAGAACAATTGCAACAGAACAGTTGCAGTTAAGCTGCACTACAACAGATAGCACTAGCGACCAACTAAACATTGACAATACTCTTATCAATGGAAAAGAACTTCTGCAGCTTGGCAGCGCGGCTCAAAGCAATGGCGCTGGACATCAACAGGTAGAACTGGCTCCTAGCAATGTGCAAGAGCAAGTCCAGCTTGCTGAAGGGAGTGAAACAACACTTCTTGCGCTATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0C6Y7	Histone-lysine N-methyltransferase PRDM9 OS=Rattus norvegicus OX=10116 GN=Prdm9 PE=3 SV=1
Q96EQ9	Histone-lysine N-methyltransferase PRDM9 OS=Mus musculus OX=10090 GN=Prdm9 PE=1 SV=2
Q9NQV7	Histone-lysine N-methyltransferase PRDM9 OS=Homo sapiens OX=9606 GN=PRDM9 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000194 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF21549 all species →	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24379 all species →	KRAB AND ZINC FINGER DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20796	PRDM7_9; [histone H3]-lysine4 N-trimethyltransferase PRDM7/9	EC:2.1.1.354	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.