Gene detail

Detailed information of evm.model.Ap6.1395 in Astrangia poculata

Genomic Location: Ap6:13614186...13626822
NR annotation: XP_027049470.1, DNA repair protein REV1-like isoform X1 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1395

atggctgcgctaaatttggaaagaaaatcgtctaaaaagaagggagatggcgaaaatccacctaaaggtgattggggtgactggggtgggtatatgcaagcaaaggtgcagaagttagatgttcagtttaaagaggacattccaaaaggaccacaggatgttgatgttcccaaaatctttgagaaagttgtaattcacatcaatggatacacagtgccaccagctgatgagctacgtcgcttggtgtatttacatggtgggcgctatcaacagtactacaccaagcgtacagtaacacacatcattgcaaccaatctaccaaatagcaaaatccaagaactcagggatgaacttgtggtacatccatcttggattttagacagcataaaagctgccagattgcttcctgtacacgagtacctcctctaccaaggacgcaaagctgcacagaaagttttaaatttcacttccaaactatcctcgacatgcacaaccagcaaaccatcccctgggggagtaccctcagtatcaacatcaaccttgcaatcccctcagggtgggcctaaggaggatatgtcatctaactccataccatctcccacaggaggacctttagtgtcagcatcgctttctacacctggtcaaaaacagtttgacgatgtcgacgatgctagaattgcaaggaatattactgagaacgattcagtttgcgaagatgaagaaatgttaagacagaatcacacttcagttaacgaatctagtaaggatagagagttgctcggtaacgataaacatggcgagtgtaatgctactttagaagtaacaacttcaacaaaaggaactgatgataccttgtttaagaagcccaatacaagcaccttacccagagctggtgatgcaaactttgtatcagaattctataacaattccaggctgcattatctatctacatggggtgcagagttcaagaagtacacaagcgatattatcaagtcttgtgcagctaaagggtggaagggtagagggactggccgggtggggccacatggtcgtgttattatgcacatagacatggattcgttttttgtttctgtgacattgcgggatcagccgcaacttcggggcaagcctattgctgtgtgtcatgctgggaaggagttctcagctgacaagtcaaaagctaagacaagttcatctttttttgctaatgcagcttccaccagtaaccagcaaacttcaccgaacaaaccgtcatcgtttttcaactccatgtcggagatcgcctcctgcagttacgaagcgagggccgctggagtccgtaacggcatgttcctgggcgcggctcgaaaactctgtcccgacatccattgcgttccttaccagtttgaacaatatcgacaagtgtcgcaaaggctctatgatattttggtgacgtatagtcatgagatcgaggctgtgagctgtgacgaggcttacattgacgtatcagagacacttgaagagagtgaaacaccgacagagcttgcagagaagattcgtgcagagatcaaggaagccactcgctgtacagcgtctgttggtatctcgtctaatatcctcctggctaggatgtgtaccagagtggctaaacctgatggctgttattacttatcacctgctgatgataccaaccagttcatgggctcccagaaggttaaagaccttccaggagtgggttggagcctgggacataagctccagacccttggagtagaaacgtgtacagacttacagaagttcagctctcaagcgttacagcgggagtttggacccaagaccggtcttcagttatatcagcactgtcgcggtattgacgacagaactctaagaactgaacgggaaaggaaatctgtatcagcggaaatcaattatggaatccgtttcacgaaggaaagtgaagtggaattattcatcaatgaactggccgaggaagtacaaaaaagactccagtcactcgacatgaagggcaggtgcattactctaaagatgaaagcacgcaaagctggagcaccaatgccgaaaaagttcatgggtcacggaatctgcgataacattgctcgctcgtgcactttaccaactgtcacggacgaggcacaagttattgctaaacagtgtcacgcactcctcaagcaactgagtgtcacgcctgaggatatgcgaggcatgggaattcaagtcagcaagttgaccgacaagaacgctagtgcttccaccaagaactcaagatcgctgtttgattttatgaaaccgcaaacaaatggcaatgaatctgtcactgaacccacggatttggaaaaagaagttggaaacacagaagaaaatcgtgaacgctcagttgctgagagtcccaaacaagaagaaaacaagcttccacccttaccaagattctcgccccagactgctcagcagactgggcaatctaagtccgaaaagagactaggtgacctgggggagagcctttacttaccctcgccgtctcagatcgatcccgcagttttcgaggcattacctgaagatattcgaaggagcatcgaaaaatcatatgccgccagaaatcagaggatttcactcaacagaacaggaaaacaagaggaagaagccgaaactccacgaccaccccagagaaaacataccaagtacaagcagggcaaaacagcttcaaaatcctcccgaacattgtttgaagagaattctttaccagaagcagcgcctccgagaacttcagagcttttaccatctccatcacaaatagacccagaattcctagcggcgcttcctgatgacgtcagacaggaaattgagcaggcttacaagcaaaaggacccccacgtgacgcgtgctcaagtccagcctctaccgactgttgatcgtgtcttgaatgctgcagccgagagaagtacagaaaggaatactacgacgtttcaagtagctgatgatcagaagaaagaaagtccccaggtcatcgctccgccaaaacaggctcgtctgggagaggctgttaccctttctgaagttaagaaagttatcaccgagtggactgatacttatgaagttccactggaggaagatgtagaagtgttaaatgactacttgttacagcttattgcaacaaaaaacttggaacagctatggatggtgttgaagtttctcgacaggagaattgacgggcgtgaagattggaagtgtgtttgttgtgcagttttggctcaagtgcaacaagaaatcagccagaaatattgcagcaaactctctgtaaaatcgctaaaattctccaacttatga

Transcript

evm.model.Ap6.1395

ATGGCTGCGCTAAATTTGGAAAGAAAATCGTCTAAAAAGAAGGGAGATGGCGAAAATCCACCTAAAGGTGATTGGGGTGACTGGGGTGGGTATATGCAAGCAAAGGTGCAGAAGTTAGATGTTCAGTTTAAAGAGGACATTCCAAAAGGACCACAGGATGTTGATGTTCCCAAAATCTTTGAGAAAGTTGTAATTCACATCAATGGATACACAGTGCCACCAGCTGATGAGCTACGTCGCTTGGTGTATTTACATGGTGGGCGCTATCAACAGTACTACACCAAGCGTACAGTAACACACATCATTGCAACCAATCTACCAAATAGCAAAATCCAAGAACTCAGGGATGAACTTGTGGTACATCCATCTTGGATTTTAGACAGCATAAAAGCTGCCAGATTGCTTCCTGTACACGAGTACCTCCTCTACCAAGGACGCAAAGCTGCACAGAAAGTTTTAAATTTCACTTCCAAACTATCCTCGACATGCACAACCAGCAAACCATCCCCTGGGGGAGTACCCTCAGTATCAACATCAACCTTGCAATCCCCTCAGGGTGGGCCTAAGGAGGATATGTCATCTAACTCCATACCATCTCCCACAGGAGGACCTTTAGTGTCAGCATCGCTTTCTACACCTGGTCAAAAACAGTTTGACGATGTCGACGATGCTAGAATTGCAAGGAATATTACTGAGAACGATTCAGTTTGCGAAGATGAAGAAATGTTAAGACAGAATCACACTTCAGTTAACGAATCTAGTAAGGATAGAGAGTTGCTCGGTAACGATAAACATGGCGAGTGTAATGCTACTTTAGAAGTAACAACTTCAACAAAAGGAACTGATGATACCTTGTTTAAGAAGCCCAATACAAGCACCTTACCCAGAGCTGGTGATGCAAACTTTGTATCAGAATTCTATAACAATTCCAGGCTGCATTATCTATCTACATGGGGTGCAGAGTTCAAGAAGTACACAAGCGATATTATCAAGTCTTGTGCAGCTAAAGGGTGGAAGGGTAGAGGGACTGGCCGGGTGGGGCCACATGGTCGTGTTATTATGCACATAGACATGGATTCGTTTTTTGTTTCTGTGACATTGCGGGATCAGCCGCAACTTCGGGGCAAGCCTATTGCTGTGTGTCATGCTGGGAAGGAGTTCTCAGCTGACAAGTCAAAAGCTAAGACAAGTTCATCTTTTTTTGCTAATGCAGCTTCCACCAGTAACCAGCAAACTTCACCGAACAAACCGTCATCGTTTTTCAACTCCATGTCGGAGATCGCCTCCTGCAGTTACGAAGCGAGGGCCGCTGGAGTCCGTAACGGCATGTTCCTGGGCGCGGCTCGAAAACTCTGTCCCGACATCCATTGCGTTCCTTACCAGTTTGAACAATATCGACAAGTGTCGCAAAGGCTCTATGATATTTTGGTGACGTATAGTCATGAGATCGAGGCTGTGAGCTGTGACGAGGCTTACATTGACGTATCAGAGACACTTGAAGAGAGTGAAACACCGACAGAGCTTGCAGAGAAGATTCGTGCAGAGATCAAGGAAGCCACTCGCTGTACAGCGTCTGTTGGTATCTCGTCTAATATCCTCCTGGCTAGGATGTGTACCAGAGTGGCTAAACCTGATGGCTGTTATTACTTATCACCTGCTGATGATACCAACCAGTTCATGGGCTCCCAGAAGGTTAAAGACCTTCCAGGAGTGGGTTGGAGCCTGGGACATAAGCTCCAGACCCTTGGAGTAGAAACGTGTACAGACTTACAGAAGTTCAGCTCTCAAGCGTTACAGCGGGAGTTTGGACCCAAGACCGGTCTTCAGTTATATCAGCACTGTCGCGGTATTGACGACAGAACTCTAAGAACTGAACGGGAAAGGAAATCTGTATCAGCGGAAATCAATTATGGAATCCGTTTCACGAAGGAAAGTGAAGTGGAATTATTCATCAATGAACTGGCCGAGGAAGTACAAAAAAGACTCCAGTCACTCGACATGAAGGGCAGGTGCATTACTCTAAAGATGAAAGCACGCAAAGCTGGAGCACCAATGCCGAAAAAGTTCATGGGTCACGGAATCTGCGATAACATTGCTCGCTCGTGCACTTTACCAACTGTCACGGACGAGGCACAAGTTATTGCTAAACAGTGTCACGCACTCCTCAAGCAACTGAGTGTCACGCCTGAGGATATGCGAGGCATGGGAATTCAAGTCAGCAAGTTGACCGACAAGAACGCTAGTGCTTCCACCAAGAACTCAAGATCGCTGTTTGATTTTATGAAACCGCAAACAAATGGCAATGAATCTGTCACTGAACCCACGGATTTGGAAAAAGAAGTTGGAAACACAGAAGAAAATCGTGAACGCTCAGTTGCTGAGAGTCCCAAACAAGAAGAAAACAAGCTTCCACCCTTACCAAGATTCTCGCCCCAGACTGCTCAGCAGACTGGGCAATCTAAGTCCGAAAAGAGACTAGGTGACCTGGGGGAGAGCCTTTACTTACCCTCGCCGTCTCAGATCGATCCCGCAGTTTTCGAGGCATTACCTGAAGATATTCGAAGGAGCATCGAAAAATCATATGCCGCCAGAAATCAGAGGATTTCACTCAACAGAACAGGAAAACAAGAGGAAGAAGCCGAAACTCCACGACCACCCCAGAGAAAACATACCAAGTACAAGCAGGGCAAAACAGCTTCAAAATCCTCCCGAACATTGTTTGAAGAGAATTCTTTACCAGAAGCAGCGCCTCCGAGAACTTCAGAGCTTTTACCATCTCCATCACAAATAGACCCAGAATTCCTAGCGGCGCTTCCTGATGACGTCAGACAGGAAATTGAGCAGGCTTACAAGCAAAAGGACCCCCACGTGACGCGTGCTCAAGTCCAGCCTCTACCGACTGTTGATCGTGTCTTGAATGCTGCAGCCGAGAGAAGTACAGAAAGGAATACTACGACGTTTCAAGTAGCTGATGATCAGAAGAAAGAAAGTCCCCAGGTCATCGCTCCGCCAAAACAGGCTCGTCTGGGAGAGGCTGTTACCCTTTCTGAAGTTAAGAAAGTTATCACCGAGTGGACTGATACTTATGAAGTTCCACTGGAGGAAGATGTAGAAGTGTTAAATGACTACTTGTTACAGCTTATTGCAACAAAAAACTTGGAACAGCTATGGATGGTGTTGAAGTTTCTCGACAGGAGAATTGACGGGCGTGAAGATTGGAAGTGTGTTTGTTGTGCAGTTTTGGCTCAAGTGCAACAAGAAATCAGCCAGAAATATTGCAGCAAACTCTCTGTAAAATCGCTAAAATTCTCCAACTTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4KWZ7	DNA repair protein REV1 OS=Gallus gallus OX=9031 GN=REV1 PE=2 SV=1
Q920Q2	DNA repair protein REV1 OS=Mus musculus OX=10090 GN=Rev1 PE=1 SV=1
Q9UBZ9	DNA repair protein REV1 OS=Homo sapiens OX=9606 GN=REV1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003771 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00817 all species →	IMS	impB/mucB/samB family	Family	Interproscan
PF11799 all species →	IMS_C	impB/mucB/samB family C-terminal domain	Domain	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF16727 all species →	REV1_C	DNA repair protein REV1 C-terminal domain	Domain	Interproscan
PF14377 all species →	UBM	Ubiquitin binding region	Motif	Interproscan
PF21704 all species →	POLH-Rev1_HhH	DNApol eta/Rev1, HhH motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001126 all species →	Domain	UmuC domain	Interproscan
IPR017961 all species →	Domain	DNA polymerase, Y-family, little finger domain	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR012112 all species →	Family	DNA repair protein Rev1	Interproscan
IPR047346 all species →	Conserved_site	DNA repair protein REV1, ubiquitin-binding motif 1/2	Interproscan
IPR031991 all species →	Domain	DNA repair protein Rev1, C-terminal	Interproscan
IPR036775 all species →	Homologous_superfamily	DNA polymerase, Y-family, little finger domain superfamily	Interproscan
IPR022880 all species →	Family	DNA polymerase IV	Interproscan
IPR038401 all species →	Homologous_superfamily	Rev1, C-terminal domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR025527 all species →	Conserved_site	HUWE1/REV1, ubiquitin-binding motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45990 all species →	DNA REPAIR PROTEIN REV1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0042276 all species →	Biological Process	error-prone translesion synthesis	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0017125 all species →	Molecular Function	deoxycytidyl transferase activity	Interproscan
GO:0070987 all species →	Biological Process	error-free translesion synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03515	REV1; DNA repair protein REV1	EC:2.7.7.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.