Gene detail

Detailed information of evm.model.Ap6.1419 in Astrangia poculata

Genomic Location: Ap6:13851248...13852246
NR annotation: XP_044165815.1, uncharacterized protein LOC122949824 [Acropora millepora]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09082	Protein gooseberry OS=Drosophila melanogaster OX=7227 GN=gsb PE=2 SV=1
Q21263	Paired box protein 2 homolog OS=Caenorhabditis elegans OX=6239 GN=pax-2 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000476 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13358 all species →	DDE_3	DDE superfamily endonuclease	Domain	Interproscan
PF00292 all species →	PAX	'Paired box' domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001523 all species →	Domain	Paired domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR038717 all species →	Domain	Tc1-like transposase, DDE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46564 all species →	TRANSPOSASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01889	FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain	EC:6.1.1.20	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap6.1419 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

26TPM > 0

4Conditions

1,187.4Max TPM

200.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism · cold control	14	11	328.46	773.87
whole organism · heat control	12	8	197.64	804.39
whole organism · cold challenge	12	4	104.35	582.43
whole organism · heat challenge	11	3	146.17	1,187.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	773.87
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	717.06
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	425.59
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	424.65
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	415.11
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	409.02
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	376.94
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	376.65
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	325.75
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	205.69
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	148.15
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	804.39
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	381.37
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	351.50
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	279.65
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	248.17
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	145.44
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	97.09
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	64.02
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	582.43
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	337.97
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	232.05
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	99.77
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	1,187.36
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	305.49
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	114.99
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.