Detailed information of evm.model.Ap6.146 in Astrangia poculata

Genomic Location: Ap6:1275254...1295698
NR annotation: XP_027053317.1, GRB10-interacting GYF protein 2-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6Y7W6GRB10-interacting GYF protein 2 OS=Homo sapiens OX=9606 GN=GIGYF2 PE=1 SV=1
O75420GRB10-interacting GYF protein 1 OS=Homo sapiens OX=9606 GN=GIGYF1 PE=1 SV=2
Q6Y7W8GRB10-interacting GYF protein 2 OS=Mus musculus OX=10090 GN=Gigyf2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003433 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02213
all species →		GYFGYF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051640
all species →		FamilyGRB10-interacting GYFInterproscan
IPR003169
all species →		DomainGYF domainInterproscan
IPR035445
all species →		Homologous_superfamilyGYF-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14445
all species →		GRB10 INTERACTING GYF PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K18730GIGYF; PERQ amino acid-rich with GYF domain-containing protein-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap6.146 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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