Gene detail

Detailed information of evm.model.Ap6.1522 in Astrangia poculata

Genomic Location: Ap6:14734815...14763697
NR annotation: KAJ7394653.1, pleckstrin y domain containing, M (with RUN domain) member 2 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1522

atgtcttcaaggagtaatcaattgaaggatgatattcttaatcaaattgcagagcagataaagggattacagcttagtcaacaaacagctctagatgaaggtataacaaactttcaagtcactgcgaacaacatccatttacaatgtttgctggatctgctggaccatattctgcttcatggactagagaaagtagaatttggttactggccatttgtaaaagaacttactcactcagaaacagtaaagcacattgttaatcaccctcaagtaacaactgatttagacaaaggtcgtgtgtggatttttacagcattcagtgatggcttacttgagagctacattagattatttgcagatagtcaaaaacaggccaaaaaattttacacaagaaaagcctttgctcgagataaagagagactcactgttctccagacattagtttctggtcttgatttcatttctattgtcctggaccaagaatggccatatcttggttatggaacacaacactttcaagattccacaaattctgttgttggtgatggtaagtctcagggtacatttgcatccagcaaagctgcagaaggagtcaacatcacctcaagtgaagaaaaagacgacaatcacagcatagctagcagtagcatatcaagctcatccacagtaacagggccactaagtcctaacagccatgcttcaataacagcaccaccaagtcctgacagtaatggaacataccagcaagagagtaagctaaattctaagcaagaagaattacaaacatcttacataaagaatggatcagctcaaattcataacagtgatgaacacgagactcaggtcagtgaagagactgttactgatgttcagaagcaacaagcacagtcaaggctccactttagcagaaactttcaaactgatcaggctatggaagacaacaatattgtctttgaacctcttaaaaagaaaaatagaaagcatataactagaaggaaaaaattagtagacaatggaaaatatgatgaaagaaatgacagttttgaagttacaccagaacccatatgtaatattgatgatcattcacgtgagaggtcaaataaagaagagcaagatgaaagttatgaagaactgcctaaggaaacatcttatggagagctgctgcatttatccagaactcaaagatcgtctttccggtctcaagatagctacccaagttgtagcagcccaactagcagtatacagtcaacagactctttggatcaattctgtaaagactttgaatctagctgtaatcttacaagcgaaatgtccctcaacagtgcaactgttcaactttgtgataacaaagcagagccagatttgtgtaatgaggaaatcagcgaagaacacgggttcccaaataatgacaaccagcagctgactactacagtcaaggaaagtgatcaaggatccttaaatgctgataaggcacctagttatgaaggtataattttaggtcttccaaaacgtccattattgcggcagattccagtaacgtcatgtgacatcagtgtggaccagaacacaatgcttacattatctctggaagtgtttgagaagaatggagaacagtttcacaggatgctggtggtaatgtgtggacaccttagtagtcagctgtactttgtttatgttctcctcacagatcatgcaatttatctgctaaagaaggttccatcacatgagggcaaaagctttcaagttcatttggcattttcatttgcaactttgaagaaaatagagattggactaaactatcaaacagttactctggcctccaaaactcaaaaatgtgttttatttgtagcagatgaagcagtcaccagagatcttttgtcatcagtgacaagcatgatagtgaaatcagggcaaggatctcttctctccaagattgtctctacttccacctttcagcaagaaactctgataaaaaaatggatgaatgaacttgaaaacattcagtgttgcagtatggacatcaggtgtttttcttttgtgcggtggtatggactatcagggccagatgccagcattgaagttcttagctacaaaagtgtaaaggaaggttacatggactgtaaacagccacagtatttaagaagagctttcaaatggaccactagttattttgtgttaatgaatggaaccttgtatcaacatgttaagcagggtgatgaggttggcaaagttgttgtacagctcagaggatcacgatgtggaggttgtcgaagagtgaatgatcctgaccgccctcatgcttttgaggttgtagcagaggatggatctccattaattgctctcgctgccttcagtgaggacgacgctgctgattggatttttagaatttgccaggctgttgctgaaacgtttgacagtgaagacgaaatgagctgcacagtgatgaaatgcgtgccctgttgtcttatcctcactgatctcaagattgtggcatgtctacccaacccaaacaaagaggaaacatttcagctgctaagtgaatgctctgttcaaagtgtgacaagactttttctggacaacgatgtcaggaactattgtattttggaatttgaacgcagtgaaatcgcaggcatagaatcatcttggtttgtttggtttaaaacggaatatgaacttgcaaagtttgaacgcgcattactggaagcttggcaagaactattccagattgatcttcagtttcttgtactgggtgaaggatccatgagagaaacagcgagacagcaggctaagaacattggagatctttataaaagccaaacggcttag

Transcript

evm.model.Ap6.1522

ATGTCTTCAAGGAGTAATCAATTGAAGGATGATATTCTTAATCAAATTGCAGAGCAGATAAAGGGATTACAGCTTAGTCAACAAACAGCTCTAGATGAAGGTATAACAAACTTTCAAGTCACTGCGAACAACATCCATTTACAATGTTTGCTGGATCTGCTGGACCATATTCTGCTTCATGGACTAGAGAAAGTAGAATTTGGTTACTGGCCATTTGTAAAAGAACTTACTCACTCAGAAACAGTAAAGCACATTGTTAATCACCCTCAAGTAACAACTGATTTAGACAAAGGTCGTGTGTGGATTTTTACAGCATTCAGTGATGGCTTACTTGAGAGCTACATTAGATTATTTGCAGATAGTCAAAAACAGGCCAAAAAATTTTACACAAGAAAAGCCTTTGCTCGAGATAAAGAGAGACTCACTGTTCTCCAGACATTAGTTTCTGGTCTTGATTTCATTTCTATTGTCCTGGACCAAGAATGGCCATATCTTGGTTATGGAACACAACACTTTCAAGATTCCACAAATTCTGTTGTTGGTGATGGTAAGTCTCAGGGTACATTTGCATCCAGCAAAGCTGCAGAAGGAGTCAACATCACCTCAAGTGAAGAAAAAGACGACAATCACAGCATAGCTAGCAGTAGCATATCAAGCTCATCCACAGTAACAGGGCCACTAAGTCCTAACAGCCATGCTTCAATAACAGCACCACCAAGTCCTGACAGTAATGGAACATACCAGCAAGAGAGTAAGCTAAATTCTAAGCAAGAAGAATTACAAACATCTTACATAAAGAATGGATCAGCTCAAATTCATAACAGTGATGAACACGAGACTCAGGTCAGTGAAGAGACTGTTACTGATGTTCAGAAGCAACAAGCACAGTCAAGGCTCCACTTTAGCAGAAACTTTCAAACTGATCAGGCTATGGAAGACAACAATATTGTCTTTGAACCTCTTAAAAAGAAAAATAGAAAGCATATAACTAGAAGGAAAAAATTAGTAGACAATGGAAAATATGATGAAAGAAATGACAGTTTTGAAGTTACACCAGAACCCATATGTAATATTGATGATCATTCACGTGAGAGGTCAAATAAAGAAGAGCAAGATGAAAGTTATGAAGAACTGCCTAAGGAAACATCTTATGGAGAGCTGCTGCATTTATCCAGAACTCAAAGATCGTCTTTCCGGTCTCAAGATAGCTACCCAAGTTGTAGCAGCCCAACTAGCAGTATACAGTCAACAGACTCTTTGGATCAATTCTGTAAAGACTTTGAATCTAGCTGTAATCTTACAAGCGAAATGTCCCTCAACAGTGCAACTGTTCAACTTTGTGATAACAAAGCAGAGCCAGATTTGTGTAATGAGGAAATCAGCGAAGAACACGGGTTCCCAAATAATGACAACCAGCAGCTGACTACTACAGTCAAGGAAAGTGATCAAGGATCCTTAAATGCTGATAAGGCACCTAGTTATGAAGGTATAATTTTAGGTCTTCCAAAACGTCCATTATTGCGGCAGATTCCAGTAACGTCATGTGACATCAGTGTGGACCAGAACACAATGCTTACATTATCTCTGGAAGTGTTTGAGAAGAATGGAGAACAGTTTCACAGGATGCTGGTGGTAATGTGTGGACACCTTAGTAGTCAGCTGTACTTTGTTTATGTTCTCCTCACAGATCATGCAATTTATCTGCTAAAGAAGGTTCCATCACATGAGGGCAAAAGCTTTCAAGTTCATTTGGCATTTTCATTTGCAACTTTGAAGAAAATAGAGATTGGACTAAACTATCAAACAGTTACTCTGGCCTCCAAAACTCAAAAATGTGTTTTATTTGTAGCAGATGAAGCAGTCACCAGAGATCTTTTGTCATCAGTGACAAGCATGATAGTGAAATCAGGGCAAGGATCTCTTCTCTCCAAGATTGTCTCTACTTCCACCTTTCAGCAAGAAACTCTGATAAAAAAATGGATGAATGAACTTGAAAACATTCAGTGTTGCAGTATGGACATCAGGTGTTTTTCTTTTGTGCGGTGGTATGGACTATCAGGGCCAGATGCCAGCATTGAAGTTCTTAGCTACAAAAGTGTAAAGGAAGGTTACATGGACTGTAAACAGCCACAGTATTTAAGAAGAGCTTTCAAATGGACCACTAGTTATTTTGTGTTAATGAATGGAACCTTGTATCAACATGTTAAGCAGGGTGATGAGGTTGGCAAAGTTGTTGTACAGCTCAGAGGATCACGATGTGGAGGTTGTCGAAGAGTGAATGATCCTGACCGCCCTCATGCTTTTGAGGTTGTAGCAGAGGATGGATCTCCATTAATTGCTCTCGCTGCCTTCAGTGAGGACGACGCTGCTGATTGGATTTTTAGAATTTGCCAGGCTGTTGCTGAAACGTTTGACAGTGAAGACGAAATGAGCTGCACAGTGATGAAATGCGTGCCCTGTTGTCTTATCCTCACTGATCTCAAGATTGTGGCATGTCTACCCAACCCAAACAAAGAGGAAACATTTCAGCTGCTAAGTGAATGCTCTGTTCAAAGTGTGACAAGACTTTTTCTGGACAACGATGTCAGGAACTATTGTATTTTGGAATTTGAACGCAGTGAAATCGCAGGCATAGAATCATCTTGGTTTGTTTGGTTTAAAACGGAATATGAACTTGCAAAGTTTGAACGCGCATTACTGGAAGCTTGGCAAGAACTATTCCAGATTGATCTTCAGTTTCTTGTACTGGGTGAAGGATCCATGAGAGAAACAGCGAGACAGCAGGCTAAGAACATTGGAGATCTTTATAAAAGCCAAACGGCTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IWE5	Pleckstrin homology domain-containing family M member 2 OS=Homo sapiens OX=9606 GN=PLEKHM2 PE=1 SV=2
Q80TQ5	Pleckstrin homology domain-containing family M member 2 OS=Mus musculus OX=10090 GN=Plekhm2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005047 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02759 all species →	RUN	RUN domain	Family	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR053015 all species →	Family	Pleckstrin homology domain-containing protein M2	Interproscan
IPR047327 all species →	Domain	PLEKHM2, RUN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46556 all species →	PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan
GO:0019894 all species →	Molecular Function	kinesin binding	Interproscan
GO:0032418 all species →	Biological Process	lysosome localization	Interproscan
GO:0032880 all species →	Biological Process	regulation of protein localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15348	PLEKHM2, SKIP; pleckstrin homology domain-containing family M member 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.