Genomic Location: Ap6:14852311...14923005
NR annotation: KAJ7394677.1, 5'-3' exoribonuclease 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.1528.1.5f15df76 |
| Transcript |
| evm.model.Ap6.1528.1.5f15df76 |
| Protein |
| evm.model.Ap6.1528.1.5f15df76 |
| UniProt accession | Description |
|---|---|
| Q8IZH2 | 5'-3' exoribonuclease 1 OS=Homo sapiens OX=9606 GN=XRN1 PE=1 SV=1 |
| P97789 | 5'-3' exoribonuclease 1 OS=Mus musculus OX=10090 GN=Xrn1 PE=1 SV=1 |
| P40383 | 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=exo2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001148 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18332 all species → | XRN1_D1 | Exoribonuclease Xrn1 D1 domain | Domain | Interproscan |
| PF18334 all species → | XRN1_D2_D3 | Exoribonuclease Xrn1 D2/D3 domain | Domain | Interproscan |
| PF17846 all species → | XRN_M | Xrn1 helical domain | Domain | Interproscan |
| PF18129 all species → | SH3_12 | Xrn1 SH3-like domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040992 all species → | Domain | 5'-3' exoribonuclease 1, D1 domain | Interproscan |
| IPR002048 all species → | Domain | EF-hand domain | Interproscan |
| IPR027073 all species → | Family | 5'-3' exoribonuclease | Interproscan |
| IPR041106 all species → | Domain | Exoribonuclease Xrn1, D2/D3 domain | Interproscan |
| IPR018247 all species → | Binding_site | EF-Hand 1, calcium-binding site | Interproscan |
| IPR047008 all species → | Homologous_superfamily | 5'-3' exoribonuclease 1, SH3-like domain superfamily | Interproscan |
| IPR047007 all species → | Homologous_superfamily | 5'-3' exoribonuclease 1, D1 domain superfamily | Interproscan |
| IPR041412 all species → | Domain | Xrn1, helical domain | Interproscan |
| IPR041385 all species → | Domain | 5'-3' exoribonuclease 1, SH3-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12341 all species → | 5'->3' EXORIBONUCLEASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
evm.model.Ap6.1528.1.5f15df76.Transcript abundance of evm.model.Ap6.1528.1.5f15df76 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
