Detailed information of evm.model.Ap6.1534_evm.model.Ap6.1537 in Astrangia poculata

Genomic Location: Ap6:15110847...15214487
NR annotation: XP_020614005.1, probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P4608728S rRNA (cytosine(4447)-C(5))-methyltransferase OS=Homo sapiens OX=9606 GN=NOP2 PE=1 SV=2
Q922K728S rRNA (cytosine-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Nop2 PE=1 SV=1
O9426825S rRNA (cytosine-C(5))-methyltransferase nop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003940 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17125
all species →		Methyltr_RsmF_NN-terminal domain of 16S rRNA methyltransferase RsmFDomainInterproscan
PF01189
all species →		Methyltr_RsmB-F16S rRNA methyltransferase RsmB/FFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR001678
all species →		DomainSAM-dependent methyltransferase RsmB-F/NOP2-type domainInterproscan
IPR031341
all species →		DomainRibosomal RNA small subunit methyltransferase F, N-terminalInterproscan
IPR023273
all species →		FamilyRNA (C5-cytosine) methyltransferase, NOP2Interproscan
IPR023267
all species →		FamilyRNA (C5-cytosine) methyltransferaseInterproscan
IPR018314
all species →		Conserved_siteBacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved siteInterproscan
IPR011023
all species →		DomainNop2pInterproscan
IPR049560
all species →		DomainSAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22807
all species →		NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008168
all species →		Molecular Functionmethyltransferase activityInterproscan
GO:0000470
all species →		Biological Processmaturation of LSU-rRNAInterproscan
GO:0001510
all species →		Biological ProcessRNA methylationInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0008173
all species →		Molecular FunctionRNA methyltransferase activityInterproscan
GO:0009383
all species →		Molecular FunctionrRNA (cytosine-C5-)-methyltransferase activityInterproscan
GO:0070475
all species →		Biological ProcessrRNA base methylationInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0008757
all species →		Molecular FunctionS-adenosylmethionine-dependent methyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14835NOP2; 25S rRNA (cytosine2870-C5)-methyltransferaseEC:2.1.1.310
Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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