Detailed information of evm.model.Ap6.157 in Astrangia poculata

Genomic Location: Ap6:1385197...1410506
NR annotation: KAJ7393481.1, Hermansky-Pudlak syndrome 3 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003955 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14763
all species →		HPS3_CHermansky-Pudlak syndrome 3 protein, C-terminal regionRepeatInterproscan
PF14761
all species →		HPS3_NHermansky-Pudlak syndrome 3 protein, N-terminalRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017216
all species →		FamilyHermansky-Pudlak syndrome 3 proteinInterproscan
IPR029438
all species →		DomainBLOC-2 complex member HPS3, C-terminal domainInterproscan
IPR029437
all species →		DomainBLOC-2 complex member HPS3, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28633
all species →		HERMANSKY-PUDLAK SYNDROME 3 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006996
all species →		Biological Processorganelle organizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20190HPS3; Hermansky-Pudlak syndrome 3 protein-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap6.157 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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