Gene detail

Detailed information of evm.model.Ap6.1596 in Astrangia poculata

Genomic Location: Ap6:15870410...15904068
NR annotation: XP_020606525.1, exosome component 10-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1596

atggctgaccgcatggagcaagacgaaaaaaataaggattctttaacggggataggagatctaaaaacgttttctcaggaatcgttaagtgccattgtccaagctatcaagaatgctgggaacttgcctgcagcaggagaagaccatgacttttattacagtttttctgactttagagaatttagaacagctcaaggagcaagacttcttagcaatatagggaatctgttacgtcagtggaaggtacactgtcaatggccgtcagatactcatggcattgatccagacagtgacgagttgcttgacagtttagtggaagccaatgacatcctgctggagcaagtggatacaagccttgatgaggcagcaggtcttaaatcaaacaaagcaaaccagacagtggctggagcacctggacaacaaggaacaccaattgtgtcaagctggaacagagccaagaaagacaccccaggaagaaaggacaccagtttccgttttcttatggccaagaacattcaacgtccacaactaagatttaaagataagattgataacagtaacactccctttattccaatcatcaaaaggaaaccaaatgctctgagacctctggaaagcaatagctcaagcactggcagtcaacctgaaaatttacaagtaccaacagctattgcagaccttatacatcaagagagaatgaaaaccctgggtagccctgttatgaacagcatgacccacccttaccaacatgaactggaggtgtttgagccttcagtgaaccagttaaagccacggaaagagcaactgtatgaagaatttgacaagactccgttcattcttgttgaaacaacagaacaacttcacgagctgagtcagcgtctctcagcagttactgagtttgccgtcgatttagagcaccattcataccggtctttccagggattctgttgtctgatgcagatatccacacgagaccaagactaccttattgacacactggagctgcgcaatgagctgcagatacttaatgactcatttaccaatcccaagatactcaaggtttttcatggggctgatatggacattggatggttacagcgagactttggtatttatgtggttaacatgtttgacacaggccaggcagccagggtgttaaactatgggaagtactccttggcattcctgctgaagaagttctgtgatgttacagcaaacaaacagtatcaactggcagattggagaataaggcctctaccatcagagatggtgcgctatgcaagagaggacacacattatttactttacatttgtgatcgattacataatgagcttatcaaaagtggaaatgcaaacagcaacttattacaatcagtgtactccaggagtaaagacatttgcttgaagcgatatgagaagccactattttccagtgaatcttttcgaaaagtattagagaaacacaaacgggcatttaacagtgagcagaagtgtgcatttcgtcttctttatgcatggagagacaatattgcgcgggaggaagatgaaggttatgggtttgttcttccaaaccatatgatgttccagatcgcagaaaccatgccaagggaggcccaaggtgttttagcttgttgtaatccagttcccacactcgtaaagcagtatgtgaatgagatccatatgctgataatgcaagcaaaagaactggcacttgctgcaaacaagaactctttgtctgctggtgcttcgtcacaagttgactctggaaatactacaagacacagtacattgacaacccccagcttctctcatccacaactgattgatccaaaatcaaatcgtacacttgttaatggtgattccttgcttgtaagtgctgcctcaccgagtttgtttggttctgtaatggcatcaggacctcctgttactagagcaaccccggctatatcattatttgagatttctgacgaccaacaacttactgaaggagagaagaaagcagaacaaatcaaggcttcctttgagaacccattccaaaagttttttccagtgaaaagtcatccagagacaacaggaggcaagactactgttaatgaacttcaaagtcacgagcaagtacacaggatcaatgagcagtggagacaagcgaccacacagctgaattcttcaccttccacatcagaaccaaatgttgggcagaaaagacatcattcagtcgacaaggaaacgccagaagatttaacaccattgaggaatagaactcctgcaaagtctgcttcaaagaaaaggaaacgggaatccagaggtgaacaggacgctgtgaatgaaccagtcgctgaacctagtacagcgtttgtgccattcaattactctgatgtggattattcaacattcactggtgatgcggcagataaagagaccaaggacaagacagttgtgtttaatccttacagctcatcacgcgactctaaatcagcaggcccacgatcaaaagtgcacatgaaatctggacagagaagcctaacgttttcctcaaacaagcaaacaaatcagaagcagaagtggcctcggagatga

Transcript

evm.model.Ap6.1596

ATGGCTGACCGCATGGAGCAAGACGAAAAAAATAAGGATTCTTTAACGGGGATAGGAGATCTAAAAACGTTTTCTCAGGAATCGTTAAGTGCCATTGTCCAAGCTATCAAGAATGCTGGGAACTTGCCTGCAGCAGGAGAAGACCATGACTTTTATTACAGTTTTTCTGACTTTAGAGAATTTAGAACAGCTCAAGGAGCAAGACTTCTTAGCAATATAGGGAATCTGTTACGTCAGTGGAAGGTACACTGTCAATGGCCGTCAGATACTCATGGCATTGATCCAGACAGTGACGAGTTGCTTGACAGTTTAGTGGAAGCCAATGACATCCTGCTGGAGCAAGTGGATACAAGCCTTGATGAGGCAGCAGGTCTTAAATCAAACAAAGCAAACCAGACAGTGGCTGGAGCACCTGGACAACAAGGAACACCAATTGTGTCAAGCTGGAACAGAGCCAAGAAAGACACCCCAGGAAGAAAGGACACCAGTTTCCGTTTTCTTATGGCCAAGAACATTCAACGTCCACAACTAAGATTTAAAGATAAGATTGATAACAGTAACACTCCCTTTATTCCAATCATCAAAAGGAAACCAAATGCTCTGAGACCTCTGGAAAGCAATAGCTCAAGCACTGGCAGTCAACCTGAAAATTTACAAGTACCAACAGCTATTGCAGACCTTATACATCAAGAGAGAATGAAAACCCTGGGTAGCCCTGTTATGAACAGCATGACCCACCCTTACCAACATGAACTGGAGGTGTTTGAGCCTTCAGTGAACCAGTTAAAGCCACGGAAAGAGCAACTGTATGAAGAATTTGACAAGACTCCGTTCATTCTTGTTGAAACAACAGAACAACTTCACGAGCTGAGTCAGCGTCTCTCAGCAGTTACTGAGTTTGCCGTCGATTTAGAGCACCATTCATACCGGTCTTTCCAGGGATTCTGTTGTCTGATGCAGATATCCACACGAGACCAAGACTACCTTATTGACACACTGGAGCTGCGCAATGAGCTGCAGATACTTAATGACTCATTTACCAATCCCAAGATACTCAAGGTTTTTCATGGGGCTGATATGGACATTGGATGGTTACAGCGAGACTTTGGTATTTATGTGGTTAACATGTTTGACACAGGCCAGGCAGCCAGGGTGTTAAACTATGGGAAGTACTCCTTGGCATTCCTGCTGAAGAAGTTCTGTGATGTTACAGCAAACAAACAGTATCAACTGGCAGATTGGAGAATAAGGCCTCTACCATCAGAGATGGTGCGCTATGCAAGAGAGGACACACATTATTTACTTTACATTTGTGATCGATTACATAATGAGCTTATCAAAAGTGGAAATGCAAACAGCAACTTATTACAATCAGTGTACTCCAGGAGTAAAGACATTTGCTTGAAGCGATATGAGAAGCCACTATTTTCCAGTGAATCTTTTCGAAAAGTATTAGAGAAACACAAACGGGCATTTAACAGTGAGCAGAAGTGTGCATTTCGTCTTCTTTATGCATGGAGAGACAATATTGCGCGGGAGGAAGATGAAGGTTATGGGTTTGTTCTTCCAAACCATATGATGTTCCAGATCGCAGAAACCATGCCAAGGGAGGCCCAAGGTGTTTTAGCTTGTTGTAATCCAGTTCCCACACTCGTAAAGCAGTATGTGAATGAGATCCATATGCTGATAATGCAAGCAAAAGAACTGGCACTTGCTGCAAACAAGAACTCTTTGTCTGCTGGTGCTTCGTCACAAGTTGACTCTGGAAATACTACAAGACACAGTACATTGACAACCCCCAGCTTCTCTCATCCACAACTGATTGATCCAAAATCAAATCGTACACTTGTTAATGGTGATTCCTTGCTTGTAAGTGCTGCCTCACCGAGTTTGTTTGGTTCTGTAATGGCATCAGGACCTCCTGTTACTAGAGCAACCCCGGCTATATCATTATTTGAGATTTCTGACGACCAACAACTTACTGAAGGAGAGAAGAAAGCAGAACAAATCAAGGCTTCCTTTGAGAACCCATTCCAAAAGTTTTTTCCAGTGAAAAGTCATCCAGAGACAACAGGAGGCAAGACTACTGTTAATGAACTTCAAAGTCACGAGCAAGTACACAGGATCAATGAGCAGTGGAGACAAGCGACCACACAGCTGAATTCTTCACCTTCCACATCAGAACCAAATGTTGGGCAGAAAAGACATCATTCAGTCGACAAGGAAACGCCAGAAGATTTAACACCATTGAGGAATAGAACTCCTGCAAAGTCTGCTTCAAAGAAAAGGAAACGGGAATCCAGAGGTGAACAGGACGCTGTGAATGAACCAGTCGCTGAACCTAGTACAGCGTTTGTGCCATTCAATTACTCTGATGTGGATTATTCAACATTCACTGGTGATGCGGCAGATAAAGAGACCAAGGACAAGACAGTTGTGTTTAATCCTTACAGCTCATCACGCGACTCTAAATCAGCAGGCCCACGATCAAAAGTGCACATGAAATCTGGACAGAGAAGCCTAACGTTTTCCTCAAACAAGCAAACAAATCAGAAGCAGAAGTGGCCTCGGAGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D4A1X2	Exosome complex component 10 OS=Rattus norvegicus OX=10116 GN=Exosc10 PE=1 SV=2
P56960	Exosome complex component 10 OS=Mus musculus OX=10090 GN=Exosc10 PE=1 SV=2
Q01780	Exosome complex component 10 OS=Homo sapiens OX=9606 GN=EXOSC10 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004012 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01612 all species →	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan
PF00570 all species →	HRDC	HRDC domain	Domain	Interproscan
PF08066 all species →	PMC2NT	PMC2NT (NUC016) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR002562 all species →	Domain	3'-5' exonuclease domain	Interproscan
IPR044876 all species →	Homologous_superfamily	HRDC domain superfamily	Interproscan
IPR002121 all species →	Domain	HRDC domain	Interproscan
IPR045092 all species →	Family	Exosome complex exonuclease Rrp6-like	Interproscan
IPR012588 all species →	Domain	Exosome-associated factor Rrp6, N-terminal	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR049559 all species →	Domain	Rrp6-like, 3'-5' exonuclease domain	Interproscan
IPR010997 all species →	Homologous_superfamily	HRDC-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12124 all species →	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000176 all species →	Cellular Component	nuclear exosome (RNase complex)	Interproscan
GO:0000467 all species →	Biological Process	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0071035 all species →	Biological Process	nuclear polyadenylation-dependent rRNA catabolic process	Interproscan
GO:0071036 all species →	Biological Process	nuclear polyadenylation-dependent snoRNA catabolic process	Interproscan
GO:0071037 all species →	Biological Process	nuclear polyadenylation-dependent snRNA catabolic process	Interproscan
GO:0071038 all species →	Biological Process	TRAMP-dependent tRNA surveillance pathway	Interproscan
GO:0071039 all species →	Biological Process	nuclear polyadenylation-dependent CUT catabolic process	Interproscan
GO:0071040 all species →	Biological Process	nuclear polyadenylation-dependent antisense transcript catabolic process	Interproscan
GO:0071044 all species →	Biological Process	histone mRNA catabolic process	Interproscan
GO:0071051 all species →	Biological Process	poly(A)-dependent snoRNA 3'-end processing	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12591	RRP6, EXOSC10; exosome complex exonuclease RRP6	EC:3.1.13.-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.