Gene detail

Detailed information of evm.model.Ap6.1612 in Astrangia poculata

Genomic Location: Ap6:16059234...16090757
NR annotation: XP_020606516.1, uncharacterized protein LOC110045263 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1612

atgcagattttcgtgaatttattaaatgcaaagaagattgcagtggaggtgaagcctttggataccgtggaaaccctaaagaacacgatctcacaagcgactggacttccattgtctgttcaatcgctccattcgcaaaatggcgctaagattgaaagtagctgtcgttatctgggggatttgataaagccaaatacgttgatcaaattgacttacaagcaggatgcctcaacaacttccttttatgtgaatgcagtgacaggaactggaaaagttttaaccgtaactcctgaaggagggaatttatccagcgtccataacttgagaagcaaattatcgacaatgcttgatctgccggcagagagcttgtttctgcgccttgtcgacatgtcgcgctttgtaaataagggtttagtggcattatttgacagtttggaggattgtggtgtaagcagtggttctgttttgtacgtacaaattcatccatggaaagaaaattggttccatgggaagataactcgtgaccaggctgaacatgtcatgtcatcagcttctgatggacagttccttatcaaagagagtgtgaacttcccgggtgattatgtactctttgtttgtgttgaaggcaaaaccaagcattacagagtgatttgtaaaagaaacatgatgtttactaccaatgagcgagagttttttgacagcatcaatgagatggtgacgttctaccagaccaacactggacagctgccaatcaaactaacagaacctgtcagtagatgcgacttcactgacagcagtgctgatgattcttcattgcatacaggggaagacaacacttttccaagaggcagactgcaaacaaatccatccacagaaatccagcttcgtgtgatagttggactaaaaacattctctcttctcacaagtcctcttaatcaagtgcatactctaaaagagcagatagaagaattaagtggagtgcctgcagagtgtcagttgttacaactggatggcaagccactggtgatgaatacttttctgcttggtgactatcacatcatggacaacacaacaatcaatgttcaagttcacccttggaatgaagattggtacgttggtaaaatgtcagcaagtgatgttgaatcagtagtcaaggagctcagtgatgctgcagatgggatgttcctcgtcagagagagcattacatatccaggagactatgtcctttatgtctggtacaaaggcaagtcataccactatagagtgctaaacaagaacaactctttctctgttgataacaagaagcaatttagcagcctgcctgatttggttgagtattacaaacaccactgtggctctctgaaaacccaacttaccaagcctgtgaagtttgataaagaacagagaggtcttattccaccagccattcttgcaagaggcaccaaagctaaagcagcttacagacgagcattagatcagggtaaaacatgcgacatccgtgtgcgagtcatgctgattggaaaggacaatgcaggcaagacaagtgttaagagatccctcaagggtgacaagtttaacaaagatgaagtaagcacagcaggtgtacagatggatccaccgctgttaagggttggagttcagccatggaagccagtatcccagtctgatgaacccaccactgtgtttgatcacaaaagtgctcaacttgtggtcaggcagctgtcaggaggttcagatgaactggaagagtcacccaccaaacccaagtgtcaaactaatggagtagaaagctcaggatattatgttgatttaaaaaagctccattctcagtcaagttttcaagactcaccaccgtcccaacgcagggaagcaatggatgaaagaggtgttctcatagagcctacttcgccgcttcttcaagatgaagttttcacgagtgattctgagccttttggtaatctgccacaggagatcatcagcttagtagaaggcattcttttacaagaccaccaatcgactgtcgtagacgagatatggccagtgatctgggactttgcaggccaatccctttatcatgccatacatcccatcttcatgtcacgggaggctgtgtatttactgatatctgacctgagcaaagacctgttccagagagcagacactcgtgtgaaacagtctggacaatccactgagcaaagggaagagatttcaaacagaggagaatcgggtcttgatcatctgatgagatggatggatttggttcattcatttcacgatccaagcagtgtggaagcctcaggcattgctcaaccacccgtcatcttagttgggactcatgcagacaaagtagtcggagatccatgggacgttatgaatgacatcttaaacagttttgaaggaaaggctttttcatcgcatattgttgaagagaaatttgttgttgacaacactcgtgctggccagcctttgcaacatgaagatgaaaatgtcaaaaggctgaggaaaaaaattctttccgtggcctcaacgttacctcacacaaagagagaaattcccctgcagtggcttcgtgttgagaaagtactacatcgcctagccagcagtggaatcaagcacatcaccaaacccgagtttaaggccattgctaacaagatatgtcaatttgaaatagaggaagacagtgaagagctgttacatttcttgtgtgattgtggcgcagttctttatttcaacgagaccgaccattccaacagtctggttattctggacccacagtggttaatcaacgtattttgtcaaatcataacagttgtttcaagcaagaaagaaccaatgccaatccgtgaacatcgtcgaactcttgctaaagatggcatcttgtcagaagaacttatcaactatgcttgtcaaaacctcggcctcgagctctcccaagactcacttctttccatcatggaaaaatccaacctcatttgccgctgggttgtgcagaaaggaaaggtggtctattttgtgccatcgatgttgacagctaagccagatgaggaaatagctggattaattggacaaggatcagttggaccaatttacatcaagttccacactgggtatgttccatatggcttgttttccagattccttgtgttgtttggtcagtacgcctctcacgacctttctgccagacctcccaagcttttcgcaaatgcagcccgattttttattggtaagaaaaacaactacaacttgacatttgcgtgcttcaagagtgtgatcacgattcacttggttcatgaagggaagtcagaggatgaaacagagactgccgctatctgtgaacaagtttgcagatttgttgaagacatccttgcctttcttggggcacagtgtccgtggctgtacttcatgacgtggcagctgtgtgctcggtgtgatctgtgtgttggtgaagatgaagatcctgagggctgttcatggcatcatgtgcactcctgtgttcatcctgactgtgcccacttcattccattagactcacagcctttaaggtgtgacaagacctacaagctaaactccctgcttactgaggacaaacttcaaccctggatcaagcatttcaactgcagaaatcaggatacagaccaactgcagtttaagccaggccgtgtatcacgtggtgatctgctactcatagcacgtgatgtgggcaaacagtgggatgtattggggcgcattctgctagacgagaaggaactggaacacattgattatgatcaacagagcttgtatgacaagtgctttgttatgctgactcgatggacagaagctcagggatccagtgctacatacgctgcattaggaaaggcattaatgcaaactttgcacacaaaagatctttgttcaaagtattgcttggcgtcgcaaggcgtactggaaagtagtgtctaa

Transcript

evm.model.Ap6.1612

ATGCAGATTTTCGTGAATTTATTAAATGCAAAGAAGATTGCAGTGGAGGTGAAGCCTTTGGATACCGTGGAAACCCTAAAGAACACGATCTCACAAGCGACTGGACTTCCATTGTCTGTTCAATCGCTCCATTCGCAAAATGGCGCTAAGATTGAAAGTAGCTGTCGTTATCTGGGGGATTTGATAAAGCCAAATACGTTGATCAAATTGACTTACAAGCAGGATGCCTCAACAACTTCCTTTTATGTGAATGCAGTGACAGGAACTGGAAAAGTTTTAACCGTAACTCCTGAAGGAGGGAATTTATCCAGCGTCCATAACTTGAGAAGCAAATTATCGACAATGCTTGATCTGCCGGCAGAGAGCTTGTTTCTGCGCCTTGTCGACATGTCGCGCTTTGTAAATAAGGGTTTAGTGGCATTATTTGACAGTTTGGAGGATTGTGGTGTAAGCAGTGGTTCTGTTTTGTACGTACAAATTCATCCATGGAAAGAAAATTGGTTCCATGGGAAGATAACTCGTGACCAGGCTGAACATGTCATGTCATCAGCTTCTGATGGACAGTTCCTTATCAAAGAGAGTGTGAACTTCCCGGGTGATTATGTACTCTTTGTTTGTGTTGAAGGCAAAACCAAGCATTACAGAGTGATTTGTAAAAGAAACATGATGTTTACTACCAATGAGCGAGAGTTTTTTGACAGCATCAATGAGATGGTGACGTTCTACCAGACCAACACTGGACAGCTGCCAATCAAACTAACAGAACCTGTCAGTAGATGCGACTTCACTGACAGCAGTGCTGATGATTCTTCATTGCATACAGGGGAAGACAACACTTTTCCAAGAGGCAGACTGCAAACAAATCCATCCACAGAAATCCAGCTTCGTGTGATAGTTGGACTAAAAACATTCTCTCTTCTCACAAGTCCTCTTAATCAAGTGCATACTCTAAAAGAGCAGATAGAAGAATTAAGTGGAGTGCCTGCAGAGTGTCAGTTGTTACAACTGGATGGCAAGCCACTGGTGATGAATACTTTTCTGCTTGGTGACTATCACATCATGGACAACACAACAATCAATGTTCAAGTTCACCCTTGGAATGAAGATTGGTACGTTGGTAAAATGTCAGCAAGTGATGTTGAATCAGTAGTCAAGGAGCTCAGTGATGCTGCAGATGGGATGTTCCTCGTCAGAGAGAGCATTACATATCCAGGAGACTATGTCCTTTATGTCTGGTACAAAGGCAAGTCATACCACTATAGAGTGCTAAACAAGAACAACTCTTTCTCTGTTGATAACAAGAAGCAATTTAGCAGCCTGCCTGATTTGGTTGAGTATTACAAACACCACTGTGGCTCTCTGAAAACCCAACTTACCAAGCCTGTGAAGTTTGATAAAGAACAGAGAGGTCTTATTCCACCAGCCATTCTTGCAAGAGGCACCAAAGCTAAAGCAGCTTACAGACGAGCATTAGATCAGGGTAAAACATGCGACATCCGTGTGCGAGTCATGCTGATTGGAAAGGACAATGCAGGCAAGACAAGTGTTAAGAGATCCCTCAAGGGTGACAAGTTTAACAAAGATGAAGTAAGCACAGCAGGTGTACAGATGGATCCACCGCTGTTAAGGGTTGGAGTTCAGCCATGGAAGCCAGTATCCCAGTCTGATGAACCCACCACTGTGTTTGATCACAAAAGTGCTCAACTTGTGGTCAGGCAGCTGTCAGGAGGTTCAGATGAACTGGAAGAGTCACCCACCAAACCCAAGTGTCAAACTAATGGAGTAGAAAGCTCAGGATATTATGTTGATTTAAAAAAGCTCCATTCTCAGTCAAGTTTTCAAGACTCACCACCGTCCCAACGCAGGGAAGCAATGGATGAAAGAGGTGTTCTCATAGAGCCTACTTCGCCGCTTCTTCAAGATGAAGTTTTCACGAGTGATTCTGAGCCTTTTGGTAATCTGCCACAGGAGATCATCAGCTTAGTAGAAGGCATTCTTTTACAAGACCACCAATCGACTGTCGTAGACGAGATATGGCCAGTGATCTGGGACTTTGCAGGCCAATCCCTTTATCATGCCATACATCCCATCTTCATGTCACGGGAGGCTGTGTATTTACTGATATCTGACCTGAGCAAAGACCTGTTCCAGAGAGCAGACACTCGTGTGAAACAGTCTGGACAATCCACTGAGCAAAGGGAAGAGATTTCAAACAGAGGAGAATCGGGTCTTGATCATCTGATGAGATGGATGGATTTGGTTCATTCATTTCACGATCCAAGCAGTGTGGAAGCCTCAGGCATTGCTCAACCACCCGTCATCTTAGTTGGGACTCATGCAGACAAAGTAGTCGGAGATCCATGGGACGTTATGAATGACATCTTAAACAGTTTTGAAGGAAAGGCTTTTTCATCGCATATTGTTGAAGAGAAATTTGTTGTTGACAACACTCGTGCTGGCCAGCCTTTGCAACATGAAGATGAAAATGTCAAAAGGCTGAGGAAAAAAATTCTTTCCGTGGCCTCAACGTTACCTCACACAAAGAGAGAAATTCCCCTGCAGTGGCTTCGTGTTGAGAAAGTACTACATCGCCTAGCCAGCAGTGGAATCAAGCACATCACCAAACCCGAGTTTAAGGCCATTGCTAACAAGATATGTCAATTTGAAATAGAGGAAGACAGTGAAGAGCTGTTACATTTCTTGTGTGATTGTGGCGCAGTTCTTTATTTCAACGAGACCGACCATTCCAACAGTCTGGTTATTCTGGACCCACAGTGGTTAATCAACGTATTTTGTCAAATCATAACAGTTGTTTCAAGCAAGAAAGAACCAATGCCAATCCGTGAACATCGTCGAACTCTTGCTAAAGATGGCATCTTGTCAGAAGAACTTATCAACTATGCTTGTCAAAACCTCGGCCTCGAGCTCTCCCAAGACTCACTTCTTTCCATCATGGAAAAATCCAACCTCATTTGCCGCTGGGTTGTGCAGAAAGGAAAGGTGGTCTATTTTGTGCCATCGATGTTGACAGCTAAGCCAGATGAGGAAATAGCTGGATTAATTGGACAAGGATCAGTTGGACCAATTTACATCAAGTTCCACACTGGGTATGTTCCATATGGCTTGTTTTCCAGATTCCTTGTGTTGTTTGGTCAGTACGCCTCTCACGACCTTTCTGCCAGACCTCCCAAGCTTTTCGCAAATGCAGCCCGATTTTTTATTGGTAAGAAAAACAACTACAACTTGACATTTGCGTGCTTCAAGAGTGTGATCACGATTCACTTGGTTCATGAAGGGAAGTCAGAGGATGAAACAGAGACTGCCGCTATCTGTGAACAAGTTTGCAGATTTGTTGAAGACATCCTTGCCTTTCTTGGGGCACAGTGTCCGTGGCTGTACTTCATGACGTGGCAGCTGTGTGCTCGGTGTGATCTGTGTGTTGGTGAAGATGAAGATCCTGAGGGCTGTTCATGGCATCATGTGCACTCCTGTGTTCATCCTGACTGTGCCCACTTCATTCCATTAGACTCACAGCCTTTAAGGTGTGACAAGACCTACAAGCTAAACTCCCTGCTTACTGAGGACAAACTTCAACCCTGGATCAAGCATTTCAACTGCAGAAATCAGGATACAGACCAACTGCAGTTTAAGCCAGGCCGTGTATCACGTGGTGATCTGCTACTCATAGCACGTGATGTGGGCAAACAGTGGGATGTATTGGGGCGCATTCTGCTAGACGAGAAGGAACTGGAACACATTGATTATGATCAACAGAGCTTGTATGACAAGTGCTTTGTTATGCTGACTCGATGGACAGAAGCTCAGGGATCCAGTGCTACATACGCTGCATTAGGAAAGGCATTAATGCAAACTTTGCACACAAAAGATCTTTGTTCAAAGTATTGCTTGGCGTCGCAAGGCGTACTGGAAAGTAGTGTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P41239	Tyrosine-protein kinase CSK OS=Gallus gallus OX=9031 GN=CSK PE=2 SV=1
P41241	Tyrosine-protein kinase CSK OS=Mus musculus OX=10090 GN=Csk PE=1 SV=2
P32577	Tyrosine-protein kinase CSK OS=Rattus norvegicus OX=10116 GN=Csk PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009343 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR051184 all species →	Family	Tyrosine-phosphorylated adapter molecule	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19969 all species →	SH2-SH3 ADAPTOR PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030971 all species →	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.1612.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.