Gene detail

Detailed information of evm.model.Ap6.1664 in Astrangia poculata

Genomic Location: Ap6:16652594...16662030
NR annotation: KAJ7318630.1, hypothetical protein OS493_037746 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

evm.model.Ap6.1664

ATGAGTGGAGAAGTCGAAGAGAACGCACAAATATTCCTTTCTTTTAGTAACCTTGGCGTGAAGATCGCCGATCGGCAAATTCTTGAAAATGTGAGCGGGAAAGTTCACCCGGGAGAAATGTTGGCTGTGATGGGTCCCAGTGGTTCTGGTAAAACAACATTGCTGAATGTCCTTGCTGGAAGATTATCTCCAGAAGATGGGGAAATTCTTCTCAATGGAACCAAGTTAAACAAGAAACTGAAGAAGAAAATTTGTTATGTCTTACAAGAGGACATTTTCTTTGGAAACCTTACTCTTAGGGAAACTCTCACATTTTCTGCAATGCTTCGTCTCCCAGATACCTTATCAAAGACAGAAAAGTTACAAAAGGTTGACAAAATTGTTGACAACTTGGATGTCAGAAAATGTTTAGACACCAAAATTGGAAGTGCTTTTGACAGAGGACTGTCTGGAGGAGAGAAAAAACGAGCAAACATTGGTTGCGAGCTGATAACAAATCCTTCTTTGATTTTCCTTGATGAACCTACATCTGGGTTGGACTCAAGCAATGCATTAAACCTCGTTAAAACTCTGAAGAACTTTGCAGCAAGAGAAAAGAAGACAGTGGTGACCACAATTCATCAGCCATCAAGTCAGATCTTTTACATGTTTGACAAGGTTCTTCTTCTGTGTGAAGGACAGGTCGCTTATTATGGAAAGGCTAGCAAAGTGCTTGATTTCTTTGAGGGTATTGGCCTGGTTTGTGATGCACACTTCAACCCAGCAGATTTTATTTTGGAAAAGGTGACAGAAGGAGAGGAAGTACAAGGAAAGATTGTGAAAGGCTGGACTGAGAGGCAAAAACGACATAAGAAGTACTCAGCAATGTCCACTGAGTATACACCAGCAACACTTGAGACTCCAAGCCCTACTGCTGAGAGCAATGAAAGACACGAATTGGAAAACAACCAGGATACAGCAAGTGAAAGAAGCAGCAAAACCTCTGATAACTCAGCTGATCAAGGCAACGTCGAGCAAGAAGATGGACAGCCAACAGCTACTGAAGATCCGCTGTGCAAGGAAGAAGAGTCATCTGGCTATTCTAGCTTGGATGTAGGGGATGGTAACTCTATTGCTCCTGATAAAGAAGTTGAAAAAGAAAGTTTGGAGAGCTCAATCCTAGACAGTAACGGAGTTCCAAAGGAACGTGGATCTTCTGTCAATGACGAAAAAGAAGTTGCAGATGAAAATGACAGCACCAATCCTTTAATTGCACACCAGAAACTATCCGCACCAAAGACCTTGTGGAACAGTGTGAGGAATTCATTCACTAAGTCGTCTGATTCACTTCCCCCAGTTCACACAGAGGCACAATTGTCCTCTGCAGATTTTAGTGTGGCTGTTGTCACTTACAAGCGTAGCACATCACGTGATTACTCCAAAGTCGACATTCATGATGATGATGATGATGAAGATCAATCTGCTCTGTACAGCGATATTTCCACATCATGGGCCACAAGTTTCTGGACACAGTTCACAGTTCTGCTACAGAGGACTTTCAAGCAGTCTTTGCCAGATATTCTTTCAAAGCTAGAGTTAATTCAGAACTTACTTCTCGCTTTGATAGTAAGCGTGGTCTGGTTTCAGCTTCCTTACAAAGAGGAGAGTATTGTGGACAGATATTCATTGATGTTTCTTAGAGTTCATTGTAATTTGCGTCACTCTTGGCCTGATGTCATTCCCAAATGAAAGAACAGTGGTGAATAAAGAGCGTGCTGCCGGTTATTACAGACTGTCTGCATACTATTTAGCCAAGCTATTTAGTGAACTACCGCTGGTCATGATTCAGCCCACTTTGTTCCTAATCATTGTGTATTGGGTGACGGGCTTAAACAGAAGCGAGGCTTTCCTGGCCCAACTTTTCCTGTTGTTGTTAACAGCCATTACAGGACAGTCTGTAGGTTTGTGTATCGGTGCTACAGTGATGGACTTTAAGCAGTCAATCGTGGTAGCTATCATTTTTGGTCTGTCGGGTATGCTGTTAGGTGGATTTTATCAGCAAAACTTACCGCCCTGGCTTGCTTGGCTTCAATACACGTCTTACTTGGCGTATTCTTATGACGCAGCCCTTGGCATAGAATTTGCCAATTCTCCCACATTCAGCTGCCGAGAAGTGGACTCGTCATATGCTGCGTGCAGGAACAATGGAACTGCTATAACAGGCAGTGAAATCTTAGAAAAACTGAATGTATCCAGAAGTGTGGGCGAAAATGTTGCCGCACTTTTCCTGTTTATCATTGTATTCAGGATTCTAACCTATCTTTCACTGCGCTACTTGCACAAGCCGAAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q93YS4	ABC transporter G family member 22 OS=Arabidopsis thaliana OX=3702 GN=ABCG22 PE=1 SV=1
Q9FT51	ABC transporter G family member 27 OS=Arabidopsis thaliana OX=3702 GN=ABCG27 PE=2 SV=1
Q84TH5	ABC transporter G family member 25 OS=Arabidopsis thaliana OX=3702 GN=ABCG25 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002225 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19055 all species →	ABC2_membrane_7	ABC-2 type transporter	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR043926 all species →	Domain	ABC transporter family G domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR050352 all species →	Family	ATP-binding cassette subfamily G transporters	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48041 all species →	ABC TRANSPORTER G FAMILY MEMBER 28	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05681	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.