Gene detail

Detailed information of evm.model.Ap6.1750_evm.model.Ap6.1753 in Astrangia poculata

Genomic Location: Ap6:17543748...17595354
NR annotation: KAJ7394471.1, hypothetical protein OS493_000282 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1750_evm.model.Ap6.1753

atggggaggggacttcgcttgatcgtgagttggttagtggcgagtctccctggtggtgaggatcagatagcagaagaactgaaacagaagaaggattgcctgctgcaggggactggttattataaagaaccaaatacccagtcagctgaaactcttcaaaagtcaccaaatattaaacctaagaggaaagagtttgttgcaaaactcagcaaatttgtgaatcttgatgaatggcagagtttacagttgttcagcagctacctggagaatgactttagaggctccaaacagcagcttctgaatatgttaaaacatgaagctcaaactgagggacttttgctgaagatcatggaatactactttgaagaacgtcttcacattttgcagtgtgttaagtttttgttaagctactggcaagaccctagacatccatttagagaggagtttgcagattgtattgaagccatgcaggaaaatgatgttatgattatgaagattacagatcagtacaaaagttgctgttgtgccaaagtccctgtacaggatactttaggatcatcactgcatctgaagacaaaatgctccagatgggctctgcagtacttgagagaacagatgctgctgttggaaatcatgcttctttattacaaagagtttgttgtcccagccaagtccttgcttgagttggcaaagctatttcagagtcaggggtttggaatgaagcaggtcaacagacatctgtttgaagcacaagctgaggtgttgcttcctcacatcagctatcttcaagtattgattctgatagtttcattggacctagaaagtttaagaaaactgatacaggaggacagttgtgcaaaacatcatcttcttcaggacaaggccacattagagggccttgatgatttgtttattggctggggtgatcagccacaccatggacctgtcatgttagcttgggcgatattcagatatgttacaatggaagccactcaggagcagtttgtcagaaggattggtagtaaagcattgcaatgctctgtgtttcaatatttactggggatgttaaaaagtgatgagttctctacaagcactccagtgtcaaatacttgcaagagccttatatatgggctgatggtgattgttttggcactttttgatgaagatacattaggagaattacagctcttggtttctgttttatcacaaactctcactgagaaaggcctctgtgtagatttctgggattcggacttaaatactggggctggtcttcttttgagttctgcaaaaagttggtttccacttcagtttcgtccatttctggaagtgctcaaatccttggcaggagatgaagattcagcagcaaaggtgtttgaatatttggattgtgtgacatcatatacggagctactcagagaaaaccagctaggagatgtagactgttctggtgataacaagatatggaggattgttactccaagacttctctacaagaatgttctaagtcaagattctaaagagctggctatgccggttggcacattaggaaaagtcgcaccaacagctgaaggacctgccatcatacaatggagctataggttctcttgctggaaactgtttggtctggaaattgacacttttcttcaaactgtgggttcagggacagctctggattgtcaaaatgtcatttgtattgtggagctggtaaaggaagttttacacaatgactggagcaaggcagttcacctcaaaccaatcattgctcgtctttacatgattatccaaagatgcactccatcacccactcctccacaagatttgattgccacctgcctgtcatgtttggcaaccactgctctcaaagatccacaggaggtgtggcataatcttcagcagacagggtttctccctcactgtgtttcagtcaaaatgtcagaagcagacaaaactaaagtggaattcctcagcacagcacctggaaactttggtgctattcttagcaacaaagagagaccagttggatattatcctgttacgatggcaacactgaatttactcctgaggcttatccatggaattaatgttgccaaggaaactgatgacagccagccaatcagctttcttgaccttgctgcttgccttgtgtttgtgatgagagaagtgttcacaggttttcacaagtggagatttactgggctcaaggacagagaggaaattgggaaaagatgccttcagttgttcaatgttgtccttggccttcactttaaaccaaagaaaattgatgaagccagtgaaacaatggaagtggatgtcacagacttgtcaaggagtccagcagtgttacaggacgccatagttcttggtctgctttattcagaagctggacagtctttactgaacattcttggcacaggagtagacactgttgataaacttgtgtctttaggaagcagttctatgggtggatatgccttggctcttgtggaacttatcaagttggcattttctgtgcttaacaggctgttggcaaggaaagggaaggatgatgatatttctcctttggaagaagcacttacatcacaagttgttcatcagctgagagataaaggacacagctatgcaacaagttggggtaatagtcagctagtgactgtcatagcctcatatgttcatcacagactggacagtcagctgcccaccttggcaacacttttactcaagagaatgtgcctggtggctcccatgtcaatgcatgccagttttggtgcagaggctgtttccttgagagatgcttttgtgtcaagactcaggacccttactgaggatgtcaagcttaaagtagtaatcctggagtttatagcaacagctgtggaaactcaacctggattaattgagctgtttcttgatctgtcttccaaagatgacaaagaattcgtcattgggcaaaatagctgtcttcatgcagttttagatattattgaccccgagaaacagtcaggtcactacatccctcctcagcttgtgtctgcagcgttcttgttacttcactctctgtggcatgacagaagggatgctgctcttacagcagtaaggaagagcccgaaattctgggagaatgtaactcacccattgataactggaatacaatcagttgatgatgaagattacagatatcacatggaaatctgctgttacgcactgcagattattgcattagaggcttactatgtttcaagaggtcaagttgacgagagtctgaagacatccatgaaaacattctgttcaaaacacaaatatcaatactgggggcagttcctaaagtcttcagaacaacctcaagctatgagtgagtcagaacaagatcaacctgagaattgtgaagaagaaaaactcaaactgctcaaagcttggagaactttcttgattgtttgctcttcatttcagactgaggtatttggactaaatgaaactgcgcgcagaaggcaaatcctggatgatattcttcaaggattgaagtcccaggtttcaagaagtacgtcagtagacagtataaatgctgccggtgagctgtgcagtgttttcttgatgttactcaagagatggaacagctgtcttcaagatctgaatccagtttttcagtgcttggtggatgtcatggaatcagcgcacaagaatgacacgcagctgtttgttcacatccgtgtggccatgttctcttccatctcagtcctgcttcagcatgccaggactgaacacctttctgatacattggaaagcagttatgccatggttctgttaccgcttgcttgcgagccactagaatacttacgaggaaggttcacaaacgaagagaaacagcaagacagggttctagagctgtctgtgtttattattgatgaaattctgaacattctgctcgccaaccctggtcagtggcttcctgtattaagagaacatacgttgtttgcttctctggtccaagccttggatgtctgcatcaagactcgtgagaagaagggatttacagaagcaattcttcacttgttcctgtccctttcaaggataccaacgagtgctgaagccttggctatgaacaatttatctcaaccattgtgtctgggaatggcgtcactctcctactcgatagaaaggcaacaggctcctcagtcctcgacaggcccccagtcccaagctacctctaaccagtctgacccacacaaccaacgaaactggaacagagtatggcagctttgccttgccgtgatggggtccatgctgcgcacgctccgacatggatttctcaaggaagcattggactttgctggtgtacaccgggagaggcttgcagaggccatggatagtgttaggcggtcccagtcatcagacgtgttaactgaagctgaagaagtcagtgctttcctgttggaactcgcgcatttctttcacgagtggaggttcactctaccggatgtactgattctactgcaggctcggattggtgttctttgtcaaagttgtgtggcgctgctgactcacccaagattgctggcccacttgctcgatttatcaaaaggatctggaagctcctccgtccatgacaagactcagtcttcagaggtgcaccgttccttgagcggctccttctcaagagaaatgctcagaacgtactcgtatgctgacgatgactcgtttagaaacagtccattggtgtctgaaacccagtcccagttgttaaagattttgtgcaattcgttggcgatgttacgacagttaactccggacatctgtggaatcctgattgatcagggtatggacctggaagagttccctccactgctctctctcgggttcagttcgccaactgttgacaatgaggagcctttgtcgtttggtactcttttggcttgcctcaacatggccctctccaatcttggccctcctgacctaaagtcaccagtgaagtcaccagtcaggacattatcagagtcattaccaagatctcttctgatgtttacgatggagaatgcattgattgttgccttgtctcaagcttgtcgatacttgagggatcccgcgctcgaccctcgggtcaagcagtttttaaagagagaacttggcagtgaactggggaactttcttggtggtctgttccgtcactttgttcgacgtggtctccctccctcccctgcgggggcacagacaagtccgagcactgcagcacggaggactccaaccaaggcactggcattcacggaggcaccggaacagaagttctttaaactggcagacacgtttgtgaagcaagtcttgagatag

Transcript

evm.model.Ap6.1750_evm.model.Ap6.1753

ATGGGGAGGGGACTTCGCTTGATCGTGAGTTGGTTAGTGGCGAGTCTCCCTGGTGGTGAGGATCAGATAGCAGAAGAACTGAAACAGAAGAAGGATTGCCTGCTGCAGGGGACTGGTTATTATAAAGAACCAAATACCCAGTCAGCTGAAACTCTTCAAAAGTCACCAAATATTAAACCTAAGAGGAAAGAGTTTGTTGCAAAACTCAGCAAATTTGTGAATCTTGATGAATGGCAGAGTTTACAGTTGTTCAGCAGCTACCTGGAGAATGACTTTAGAGGCTCCAAACAGCAGCTTCTGAATATGTTAAAACATGAAGCTCAAACTGAGGGACTTTTGCTGAAGATCATGGAATACTACTTTGAAGAACGTCTTCACATTTTGCAGTGTGTTAAGTTTTTGTTAAGCTACTGGCAAGACCCTAGACATCCATTTAGAGAGGAGTTTGCAGATTGTATTGAAGCCATGCAGGAAAATGATGTTATGATTATGAAGATTACAGATCAGTACAAAAGTTGCTGTTGTGCCAAAGTCCCTGTACAGGATACTTTAGGATCATCACTGCATCTGAAGACAAAATGCTCCAGATGGGCTCTGCAGTACTTGAGAGAACAGATGCTGCTGTTGGAAATCATGCTTCTTTATTACAAAGAGTTTGTTGTCCCAGCCAAGTCCTTGCTTGAGTTGGCAAAGCTATTTCAGAGTCAGGGGTTTGGAATGAAGCAGGTCAACAGACATCTGTTTGAAGCACAAGCTGAGGTGTTGCTTCCTCACATCAGCTATCTTCAAGTATTGATTCTGATAGTTTCATTGGACCTAGAAAGTTTAAGAAAACTGATACAGGAGGACAGTTGTGCAAAACATCATCTTCTTCAGGACAAGGCCACATTAGAGGGCCTTGATGATTTGTTTATTGGCTGGGGTGATCAGCCACACCATGGACCTGTCATGTTAGCTTGGGCGATATTCAGATATGTTACAATGGAAGCCACTCAGGAGCAGTTTGTCAGAAGGATTGGTAGTAAAGCATTGCAATGCTCTGTGTTTCAATATTTACTGGGGATGTTAAAAAGTGATGAGTTCTCTACAAGCACTCCAGTGTCAAATACTTGCAAGAGCCTTATATATGGGCTGATGGTGATTGTTTTGGCACTTTTTGATGAAGATACATTAGGAGAATTACAGCTCTTGGTTTCTGTTTTATCACAAACTCTCACTGAGAAAGGCCTCTGTGTAGATTTCTGGGATTCGGACTTAAATACTGGGGCTGGTCTTCTTTTGAGTTCTGCAAAAAGTTGGTTTCCACTTCAGTTTCGTCCATTTCTGGAAGTGCTCAAATCCTTGGCAGGAGATGAAGATTCAGCAGCAAAGGTGTTTGAATATTTGGATTGTGTGACATCATATACGGAGCTACTCAGAGAAAACCAGCTAGGAGATGTAGACTGTTCTGGTGATAACAAGATATGGAGGATTGTTACTCCAAGACTTCTCTACAAGAATGTTCTAAGTCAAGATTCTAAAGAGCTGGCTATGCCGGTTGGCACATTAGGAAAAGTCGCACCAACAGCTGAAGGACCTGCCATCATACAATGGAGCTATAGGTTCTCTTGCTGGAAACTGTTTGGTCTGGAAATTGACACTTTTCTTCAAACTGTGGGTTCAGGGACAGCTCTGGATTGTCAAAATGTCATTTGTATTGTGGAGCTGGTAAAGGAAGTTTTACACAATGACTGGAGCAAGGCAGTTCACCTCAAACCAATCATTGCTCGTCTTTACATGATTATCCAAAGATGCACTCCATCACCCACTCCTCCACAAGATTTGATTGCCACCTGCCTGTCATGTTTGGCAACCACTGCTCTCAAAGATCCACAGGAGGTGTGGCATAATCTTCAGCAGACAGGGTTTCTCCCTCACTGTGTTTCAGTCAAAATGTCAGAAGCAGACAAAACTAAAGTGGAATTCCTCAGCACAGCACCTGGAAACTTTGGTGCTATTCTTAGCAACAAAGAGAGACCAGTTGGATATTATCCTGTTACGATGGCAACACTGAATTTACTCCTGAGGCTTATCCATGGAATTAATGTTGCCAAGGAAACTGATGACAGCCAGCCAATCAGCTTTCTTGACCTTGCTGCTTGCCTTGTGTTTGTGATGAGAGAAGTGTTCACAGGTTTTCACAAGTGGAGATTTACTGGGCTCAAGGACAGAGAGGAAATTGGGAAAAGATGCCTTCAGTTGTTCAATGTTGTCCTTGGCCTTCACTTTAAACCAAAGAAAATTGATGAAGCCAGTGAAACAATGGAAGTGGATGTCACAGACTTGTCAAGGAGTCCAGCAGTGTTACAGGACGCCATAGTTCTTGGTCTGCTTTATTCAGAAGCTGGACAGTCTTTACTGAACATTCTTGGCACAGGAGTAGACACTGTTGATAAACTTGTGTCTTTAGGAAGCAGTTCTATGGGTGGATATGCCTTGGCTCTTGTGGAACTTATCAAGTTGGCATTTTCTGTGCTTAACAGGCTGTTGGCAAGGAAAGGGAAGGATGATGATATTTCTCCTTTGGAAGAAGCACTTACATCACAAGTTGTTCATCAGCTGAGAGATAAAGGACACAGCTATGCAACAAGTTGGGGTAATAGTCAGCTAGTGACTGTCATAGCCTCATATGTTCATCACAGACTGGACAGTCAGCTGCCCACCTTGGCAACACTTTTACTCAAGAGAATGTGCCTGGTGGCTCCCATGTCAATGCATGCCAGTTTTGGTGCAGAGGCTGTTTCCTTGAGAGATGCTTTTGTGTCAAGACTCAGGACCCTTACTGAGGATGTCAAGCTTAAAGTAGTAATCCTGGAGTTTATAGCAACAGCTGTGGAAACTCAACCTGGATTAATTGAGCTGTTTCTTGATCTGTCTTCCAAAGATGACAAAGAATTCGTCATTGGGCAAAATAGCTGTCTTCATGCAGTTTTAGATATTATTGACCCCGAGAAACAGTCAGGTCACTACATCCCTCCTCAGCTTGTGTCTGCAGCGTTCTTGTTACTTCACTCTCTGTGGCATGACAGAAGGGATGCTGCTCTTACAGCAGTAAGGAAGAGCCCGAAATTCTGGGAGAATGTAACTCACCCATTGATAACTGGAATACAATCAGTTGATGATGAAGATTACAGATATCACATGGAAATCTGCTGTTACGCACTGCAGATTATTGCATTAGAGGCTTACTATGTTTCAAGAGGTCAAGTTGACGAGAGTCTGAAGACATCCATGAAAACATTCTGTTCAAAACACAAATATCAATACTGGGGGCAGTTCCTAAAGTCTTCAGAACAACCTCAAGCTATGAGTGAGTCAGAACAAGATCAACCTGAGAATTGTGAAGAAGAAAAACTCAAACTGCTCAAAGCTTGGAGAACTTTCTTGATTGTTTGCTCTTCATTTCAGACTGAGGTATTTGGACTAAATGAAACTGCGCGCAGAAGGCAAATCCTGGATGATATTCTTCAAGGATTGAAGTCCCAGGTTTCAAGAAGTACGTCAGTAGACAGTATAAATGCTGCCGGTGAGCTGTGCAGTGTTTTCTTGATGTTACTCAAGAGATGGAACAGCTGTCTTCAAGATCTGAATCCAGTTTTTCAGTGCTTGGTGGATGTCATGGAATCAGCGCACAAGAATGACACGCAGCTGTTTGTTCACATCCGTGTGGCCATGTTCTCTTCCATCTCAGTCCTGCTTCAGCATGCCAGGACTGAACACCTTTCTGATACATTGGAAAGCAGTTATGCCATGGTTCTGTTACCGCTTGCTTGCGAGCCACTAGAATACTTACGAGGAAGGTTCACAAACGAAGAGAAACAGCAAGACAGGGTTCTAGAGCTGTCTGTGTTTATTATTGATGAAATTCTGAACATTCTGCTCGCCAACCCTGGTCAGTGGCTTCCTGTATTAAGAGAACATACGTTGTTTGCTTCTCTGGTCCAAGCCTTGGATGTCTGCATCAAGACTCGTGAGAAGAAGGGATTTACAGAAGCAATTCTTCACTTGTTCCTGTCCCTTTCAAGGATACCAACGAGTGCTGAAGCCTTGGCTATGAACAATTTATCTCAACCATTGTGTCTGGGAATGGCGTCACTCTCCTACTCGATAGAAAGGCAACAGGCTCCTCAGTCCTCGACAGGCCCCCAGTCCCAAGCTACCTCTAACCAGTCTGACCCACACAACCAACGAAACTGGAACAGAGTATGGCAGCTTTGCCTTGCCGTGATGGGGTCCATGCTGCGCACGCTCCGACATGGATTTCTCAAGGAAGCATTGGACTTTGCTGGTGTACACCGGGAGAGGCTTGCAGAGGCCATGGATAGTGTTAGGCGGTCCCAGTCATCAGACGTGTTAACTGAAGCTGAAGAAGTCAGTGCTTTCCTGTTGGAACTCGCGCATTTCTTTCACGAGTGGAGGTTCACTCTACCGGATGTACTGATTCTACTGCAGGCTCGGATTGGTGTTCTTTGTCAAAGTTGTGTGGCGCTGCTGACTCACCCAAGATTGCTGGCCCACTTGCTCGATTTATCAAAAGGATCTGGAAGCTCCTCCGTCCATGACAAGACTCAGTCTTCAGAGGTGCACCGTTCCTTGAGCGGCTCCTTCTCAAGAGAAATGCTCAGAACGTACTCGTATGCTGACGATGACTCGTTTAGAAACAGTCCATTGGTGTCTGAAACCCAGTCCCAGTTGTTAAAGATTTTGTGCAATTCGTTGGCGATGTTACGACAGTTAACTCCGGACATCTGTGGAATCCTGATTGATCAGGGTATGGACCTGGAAGAGTTCCCTCCACTGCTCTCTCTCGGGTTCAGTTCGCCAACTGTTGACAATGAGGAGCCTTTGTCGTTTGGTACTCTTTTGGCTTGCCTCAACATGGCCCTCTCCAATCTTGGCCCTCCTGACCTAAAGTCACCAGTGAAGTCACCAGTCAGGACATTATCAGAGTCATTACCAAGATCTCTTCTGATGTTTACGATGGAGAATGCATTGATTGTTGCCTTGTCTCAAGCTTGTCGATACTTGAGGGATCCCGCGCTCGACCCTCGGGTCAAGCAGTTTTTAAAGAGAGAACTTGGCAGTGAACTGGGGAACTTTCTTGGTGGTCTGTTCCGTCACTTTGTTCGACGTGGTCTCCCTCCCTCCCCTGCGGGGGCACAGACAAGTCCGAGCACTGCAGCACGGAGGACTCCAACCAAGGCACTGGCATTCACGGAGGCACCGGAACAGAAGTTCTTTAAACTGGCAGACACGTTTGTGAAGCAAGTCTTGAGATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SRE5	Nucleoporin NUP188 OS=Homo sapiens OX=9606 GN=NUP188 PE=1 SV=1
Q6ZQH8	Nucleoporin NUP188 OS=Mus musculus OX=10090 GN=Nup188 PE=1 SV=2
F6WXT2	Nucleoporin NUP188 OS=Xenopus tropicalis OX=8364 GN=nup188 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002935 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10487 all species →	Nup188_N	Nucleoporin Nup188, N-terminal	Repeat	Interproscan
PF21093 all species →	Nup188_N-subdom_III	Nucleoporin Nup188, N-terminal subdomain III	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018864 all species →	Domain	Nucleoporin Nup188, N-terminal	Interproscan
IPR048883 all species →	Domain	Nucleoporin Nup188, N-terminal subdomain III	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR044840 all species →	Family	Nucleoporin Nup188	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31431 all species →	NUCLEOPORIN NUP188 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0044611 all species →	Cellular Component	nuclear pore inner ring	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14311	NUP188; nuclear pore complex protein Nup188	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.