Gene detail

Detailed information of evm.model.Ap6.1911 in Astrangia poculata

Genomic Location: Ap6:19031692...19038525
NR annotation: MCT4603087.1, reverse transcriptase domain-containing protein [Marinifilum sp.]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1911

atggaggagcaagacatcgatagcttgaaacttcaggaatatttcaagcagagcatggaagagtatacctttgacagctcgaaacttcacgaatatctgaagcaaaatctggtagattttccacccggagacggagagctaaaaatgttcaagttcagggctggcacctcaaatcctaccttcctacttcaaaaaaatggtaaagagttcgtgttgcggcacaagtcaccagtgcaggtgtacattggttatcacaaggtcgatgttgagtacaaaatcatgtccgcccttggagaggcttcttttccggtacctaaaatgtatctcttctgcgaggataagacaattatgggccaagaattttatgtcatggagtatatcaaggctcgtcagttcccggatgcaaatttacccagcgttcctccagatcagcgaaagtctatgtttgagactgtaattagaacactggtgcaacttcaatcagttgacacagataagcttcagttagatggcatcggtgacaaagtgaacttccttcaacagaggggtcacccaacggatcttctcggtgaatatctgtttggaaggcctgttttacagtctcaggtcttggccgtgatagactgggaagcagcatcctggggacatccatttgaagaccttgcgtacatctgttttcctcaccactaccctgcggagttagaggttttacctggtgttaaattaggttattactcagcagggatccccagtgaggaggcattactttctttatactgtgagctgactggtaacagtctccctcttccaaactggtcattctttaaggcactggtattattccgcgttttcgtaaatattcagtctaccctactgcttctatatagtatcactgagttagcgggaggtccgtattcacttggagaaacgttggtccgtgttggacaaataatttggacggagctgaaaacaggcttcatacataaaataagatttttaatagcatattccccacacgaatatgagcttctccatgactatgtcgtgcgcggctacattgtgcggtctagaatcaattggtacgagaacggcgagaaaaactcagaatactttttgaatttggaaaaagctaggtgtggtaaaactgctgtaaggcgactttatgattgcaccggaaaaattacagtcaatcctaaatctataataaacgtgcttagagacttttatcaaaacctatatagcaaccatgactccgaagaaggcgaagaatctgcttttgactttttagaaaatccgaacatacccacgttgaataacaattcgtcgatgagttgtgaaggactgcttacgcgcgctgaatgttttgaagcgctaaataaatttcctaatggcaagacccctggaaatgacggactcacagctgaattctataaaactttctggtatttattaggtcagcagctcacagactccctgaactattcctttgagcacggcgaactatccacctcacaaaagcaagccattattaaattaatagacaaaaaagacagagatagaaggtacatcaaaaattggaggccaatttctcttcttaacgtggatatgaaaattgcttcaaaagccctcgctctacgcttagagaaaattttaccagagatcatacaggctgaccaatatgcttatgtcagaggaagaacgatctttgatgctatccgcaccattgaagatatcatggagtacactaagattcaacagctgtctggtctaatggttgcctttgatttcgagaaagcttttgactcactaagctggtccttcttatttaaagccttgcgagcttttaacttcggtgaatcgtttatccgttgggtttctgtactgtactgtaacatatcgagctgtgttataaacaacggcttttcttctcagctttttgacgttcgaagaggtgtcaggcagggggatccgctgtcggcatacctctttatcattgctctcgaagtgttgcttgttagattcagaagtgacgtgagtataaaaggtattgtcgttgacaaggaaatcaaacttgcagctttcgccgatgatctgacaacgtttttacatgacgtcaactccctcgaaaatctctccacgactcttcataaatttggattgtgttctggcttgaagctcaacgcggagaaaactgaagctttatggctaggaaccagccacgataacgaccaaccctttcttgctggtatcgacaaagttaataaaccaattaaaattcttggcgttcattttacctacgatttgaagaaaaaacaagagctcaactatgatgaaactctaaagtcgctttccgataccctagcaggatggagatggcggaacttgactttatatggcaaaatccaggtcgttaagacatttcttttaccaaaatttatgtttcgtgcgtcactcatgtgctccacgaaaaaaataatcaaagagctcaactccattatctacaggttcatctggaagggatgtgacaaaattaaacgcttagcactaatcagtgattataagaatggtggtctaagaatgccacatgttaaaactcttctcgatacccaacgcattatctgtcttaaaaaatatatagaggattacgacagcccatggaaacactttctttcgttctttctcaaggattttggcgaaaaatttctcttatactgcaatttcaatcctgctgacctaccagaccatattcccagcttttacagagactgtcttgatgtctggtcaaaattaacgaccaaacctgccgagtcccgtggcgaagttctaaagcaaattctctggaacaataaattcgtacgcatcaacggcaaacctattttttacagaagactattctcaaagggtatcattttcatttctgacattctgaccaagaacggcaagctaaagccttggccctcttttgcgacaattgggcttacgcttattgaatttttctcactactgggtatttttgactctcttccttctccgtggaaagccctaattaattcgaatgggactcctattgaatcttacatcccacctgtattgcaacacaccctctatttaaatggtaaatgcttttcgccggcttga

Transcript

evm.model.Ap6.1911

ATGGAGGAGCAAGACATCGATAGCTTGAAACTTCAGGAATATTTCAAGCAGAGCATGGAAGAGTATACCTTTGACAGCTCGAAACTTCACGAATATCTGAAGCAAAATCTGGTAGATTTTCCACCCGGAGACGGAGAGCTAAAAATGTTCAAGTTCAGGGCTGGCACCTCAAATCCTACCTTCCTACTTCAAAAAAATGGTAAAGAGTTCGTGTTGCGGCACAAGTCACCAGTGCAGGTGTACATTGGTTATCACAAGGTCGATGTTGAGTACAAAATCATGTCCGCCCTTGGAGAGGCTTCTTTTCCGGTACCTAAAATGTATCTCTTCTGCGAGGATAAGACAATTATGGGCCAAGAATTTTATGTCATGGAGTATATCAAGGCTCGTCAGTTCCCGGATGCAAATTTACCCAGCGTTCCTCCAGATCAGCGAAAGTCTATGTTTGAGACTGTAATTAGAACACTGGTGCAACTTCAATCAGTTGACACAGATAAGCTTCAGTTAGATGGCATCGGTGACAAAGTGAACTTCCTTCAACAGAGGGGTCACCCAACGGATCTTCTCGGTGAATATCTGTTTGGAAGGCCTGTTTTACAGTCTCAGGTCTTGGCCGTGATAGACTGGGAAGCAGCATCCTGGGGACATCCATTTGAAGACCTTGCGTACATCTGTTTTCCTCACCACTACCCTGCGGAGTTAGAGGTTTTACCTGGTGTTAAATTAGGTTATTACTCAGCAGGGATCCCCAGTGAGGAGGCATTACTTTCTTTATACTGTGAGCTGACTGGTAACAGTCTCCCTCTTCCAAACTGGTCATTCTTTAAGGCACTGGTATTATTCCGCGTTTTCGTAAATATTCAGTCTACCCTACTGCTTCTATATAGTATCACTGAGTTAGCGGGAGGTCCGTATTCACTTGGAGAAACGTTGGTCCGTGTTGGACAAATAATTTGGACGGAGCTGAAAACAGGCTTCATACATAAAATAAGATTTTTAATAGCATATTCCCCACACGAATATGAGCTTCTCCATGACTATGTCGTGCGCGGCTACATTGTGCGGTCTAGAATCAATTGGTACGAGAACGGCGAGAAAAACTCAGAATACTTTTTGAATTTGGAAAAAGCTAGGTGTGGTAAAACTGCTGTAAGGCGACTTTATGATTGCACCGGAAAAATTACAGTCAATCCTAAATCTATAATAAACGTGCTTAGAGACTTTTATCAAAACCTATATAGCAACCATGACTCCGAAGAAGGCGAAGAATCTGCTTTTGACTTTTTAGAAAATCCGAACATACCCACGTTGAATAACAATTCGTCGATGAGTTGTGAAGGACTGCTTACGCGCGCTGAATGTTTTGAAGCGCTAAATAAATTTCCTAATGGCAAGACCCCTGGAAATGACGGACTCACAGCTGAATTCTATAAAACTTTCTGGTATTTATTAGGTCAGCAGCTCACAGACTCCCTGAACTATTCCTTTGAGCACGGCGAACTATCCACCTCACAAAAGCAAGCCATTATTAAATTAATAGACAAAAAAGACAGAGATAGAAGGTACATCAAAAATTGGAGGCCAATTTCTCTTCTTAACGTGGATATGAAAATTGCTTCAAAAGCCCTCGCTCTACGCTTAGAGAAAATTTTACCAGAGATCATACAGGCTGACCAATATGCTTATGTCAGAGGAAGAACGATCTTTGATGCTATCCGCACCATTGAAGATATCATGGAGTACACTAAGATTCAACAGCTGTCTGGTCTAATGGTTGCCTTTGATTTCGAGAAAGCTTTTGACTCACTAAGCTGGTCCTTCTTATTTAAAGCCTTGCGAGCTTTTAACTTCGGTGAATCGTTTATCCGTTGGGTTTCTGTACTGTACTGTAACATATCGAGCTGTGTTATAAACAACGGCTTTTCTTCTCAGCTTTTTGACGTTCGAAGAGGTGTCAGGCAGGGGGATCCGCTGTCGGCATACCTCTTTATCATTGCTCTCGAAGTGTTGCTTGTTAGATTCAGAAGTGACGTGAGTATAAAAGGTATTGTCGTTGACAAGGAAATCAAACTTGCAGCTTTCGCCGATGATCTGACAACGTTTTTACATGACGTCAACTCCCTCGAAAATCTCTCCACGACTCTTCATAAATTTGGATTGTGTTCTGGCTTGAAGCTCAACGCGGAGAAAACTGAAGCTTTATGGCTAGGAACCAGCCACGATAACGACCAACCCTTTCTTGCTGGTATCGACAAAGTTAATAAACCAATTAAAATTCTTGGCGTTCATTTTACCTACGATTTGAAGAAAAAACAAGAGCTCAACTATGATGAAACTCTAAAGTCGCTTTCCGATACCCTAGCAGGATGGAGATGGCGGAACTTGACTTTATATGGCAAAATCCAGGTCGTTAAGACATTTCTTTTACCAAAATTTATGTTTCGTGCGTCACTCATGTGCTCCACGAAAAAAATAATCAAAGAGCTCAACTCCATTATCTACAGGTTCATCTGGAAGGGATGTGACAAAATTAAACGCTTAGCACTAATCAGTGATTATAAGAATGGTGGTCTAAGAATGCCACATGTTAAAACTCTTCTCGATACCCAACGCATTATCTGTCTTAAAAAATATATAGAGGATTACGACAGCCCATGGAAACACTTTCTTTCGTTCTTTCTCAAGGATTTTGGCGAAAAATTTCTCTTATACTGCAATTTCAATCCTGCTGACCTACCAGACCATATTCCCAGCTTTTACAGAGACTGTCTTGATGTCTGGTCAAAATTAACGACCAAACCTGCCGAGTCCCGTGGCGAAGTTCTAAAGCAAATTCTCTGGAACAATAAATTCGTACGCATCAACGGCAAACCTATTTTTTACAGAAGACTATTCTCAAAGGGTATCATTTTCATTTCTGACATTCTGACCAAGAACGGCAAGCTAAAGCCTTGGCCCTCTTTTGCGACAATTGGGCTTACGCTTATTGAATTTTTCTCACTACTGGGTATTTTTGACTCTCTTCCTTCTCCGTGGAAAGCCCTAATTAATTCGAATGGGACTCCTATTGAATCTTACATCCCACCTGTATTGCAACACACCCTCTATTTAAATGGTAAATGCTTTTCGCCGGCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14381	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1
Q5R778	Acyl-CoA dehydrogenase family member 11 OS=Pongo abelii OX=9601 GN=ACAD11 PE=2 SV=2
Q709F0	Acyl-CoA dehydrogenase family member 11 OS=Homo sapiens OX=9606 GN=ACAD11 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01636 all species →	APH	Phosphotransferase enzyme family	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR002575 all species →	Domain	Aminoglycoside phosphotransferase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR041726 all species →	Domain	Acyl-CoA dehydrogenase family member 10/11, N-terminal	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31635 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap6.1911. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.1911.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.