Detailed information of evm.model.Ap6.2038 in Astrangia poculata

Genomic Location: Ap6:20204235...20212467
NR annotation: XP_020616653.1, histone deacetylase 8-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7SXM0Histone deacetylase 8 OS=Danio rerio OX=7955 GN=hdac8 PE=2 SV=1
B1H369Histone deacetylase 8 OS=Xenopus tropicalis OX=8364 GN=hdac8 PE=2 SV=1
Q8VH37Histone deacetylase 8 OS=Mus musculus OX=10090 GN=Hdac8 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001189 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00850
all species →		Hist_deacetylHistone deacetylase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023696
all species →		Homologous_superfamilyUreohydrolase domain superfamilyInterproscan
IPR000286
all species →		FamilyHistone deacetylase familyInterproscan
IPR023801
all species →		DomainHistone deacetylase domainInterproscan
IPR037138
all species →		Homologous_superfamilyHistone deacetylase domain superfamilyInterproscan
IPR050284
all species →		FamilyHistone deacetylase and polyamine deacetylaseInterproscan
IPR003084
all species →		FamilyHistone deacetylaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10625
all species →		HISTONE DEACETYLASE HDAC1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000122
all species →		Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0004407
all species →		Molecular Functionhistone deacetylase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016575
all species →		Biological Processobsolete histone deacetylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11405HDAC8; histone deacetylase 8EC:3.5.1.98
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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