Detailed information of evm.model.Ap6.2068 in Astrangia poculata

Genomic Location: Ap6:20500459...20501955
NR annotation: HAS45470.1, hypothetical protein [Microscillaceae bacterium]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q03274Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1
P0CV25Secreted RxLR effector protein 78 OS=Plasmopara viticola OX=143451 GN=RXLR78 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000039 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR052343
all species →		FamilyDiverse Retrotransposon and Effector-Associated ProteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46890
all species →		NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap6.2068. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap6.2068.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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