Genomic Location: Ap6:167835...186263
NR annotation: XP_020626243.1, chloride channel protein 2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.22 |
| Transcript |
| evm.model.Ap6.22 |
| Protein |
| evm.model.Ap6.22 |
| UniProt accession | Description |
|---|---|
| Q9WU45 | Chloride channel protein 2 OS=Cavia porcellus OX=10141 GN=CLCN2 PE=1 SV=1 |
| P51788 | Chloride channel protein 2 OS=Homo sapiens OX=9606 GN=CLCN2 PE=1 SV=2 |
| P35525 | Chloride channel protein 2 OS=Rattus norvegicus OX=10116 GN=Clcn2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004432 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00654 all species → | Voltage_CLC | Voltage gated chloride channel | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR046342 all species → | Homologous_superfamily | CBS domain superfamily | Interproscan |
| IPR050970 all species → | Family | Voltage-gated chloride channel | Interproscan |
| IPR014743 all species → | Homologous_superfamily | Chloride channel, core | Interproscan |
| IPR001807 all species → | Family | Chloride channel, voltage gated | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45720 all species → | CHLORIDE CHANNEL PROTEIN 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005247 all species → | Molecular Function | voltage-gated chloride channel activity | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006821 all species → | Biological Process | chloride transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05011 | CLCN2; chloride channel 2 | - | Ion channels | ko04040 | deepkoala |
Transcript abundance of evm.model.Ap6.22 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
