Detailed information of evm.model.Ap6.2207 in Astrangia poculata

Genomic Location: Ap6:21739542...21747828
NR annotation: XP_020617847.1, nucleolar pre-ribosomal-associated protein 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002517 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11707
all species →		Npa1Ribosome 60S biogenesis N-terminalFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039844
all species →		FamilyNucleolar pre-ribosomal-associated protein 1Interproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan
IPR021714
all species →		DomainNucleolar pre-ribosomal-associated protein 1, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13500
all species →		NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000463
all species →		Biological Processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000466
all species →		Biological Processmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap6.2207.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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