Gene detail

Detailed information of evm.model.Ap6.2287 in Astrangia poculata

Genomic Location: Ap6:22381285...22413434
NR annotation: PFX33727.1, NADPH oxidase 4 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.2287

atggcggaaaatgaagaagcgagcaagagaaaaagcgaagaagaagtagacgccagcgaggctgcaccaaaacgagtacgattggaatcgcaagatctgaaggaaatgtcgaaagaggacattttggaaagggttaagcagttggatggttatgttgatcacctggaaaagaagcaaaatggagaacaagcaaataaagaactagctggactcttggagaccggagagaagctaaaacaacaacagcaagaatccacaaggcgcgagaatgtgttggtgatgaggcttgctacaaaggaacaagaaatgcaagatctactgactcaaatccacgatttaaaacaagctcaaaatccatcctcgatacagctgcgttcaacgttactggatcctgcagtaaatttgttgtttcaacgaatgaaaacggacttggactctgaaaaggagaaactggaacaagcacagaatgacctcagcgcctggaagtttactcctgacagtgttactggcaagaaactgatggcaaaatgccgcatgttaatccaggaaaatcaagagcttggtcgccagttatctcagggacgagtagcgcagctggaagctgagcttgctcttcagaaaaaatacagcgacgagctgaaaggcagtcaagatgagttgaatgacttcgttatccagctggacgaggaagtagaaggtatgcagtcgaccatcttaactcttcagcaccaactgaaagactgcaaacagcaattgactcaatcacaggagaacgcgcagctttacgaagaaaaactaaagaccactgaaagattgctggatgaaatgcgccagcagaactcacctgtcagcgtaaagtcagaggaccaagacgagcatgcgcaaacgctaacgcagccgtcgcaggcagatgtttggaccgcgggcgttgaaagcgcgccaagcgatagaacatcccccgccgcgcaagtcgaggaaagcaaagaaagcgaagaaaggatactgcttagcgctgttgtaactgtccctacgaaacccgcagccggcgtgccctcggcgttttctatcagccagttgctagcgactgactcgaaccttgggaaggaggttaaagagcgaaacactttagagaacggcggaagccgacacgaaagcccgccattagaacccactgaaatgactgaatccccgctagtcgcggccatgggattggtggagaggattgggtgtgactcaaatactttcaatggggaggtcataatatcagcggtctttgtggcatttttcctgggttcttacaacaagtacagatcttgccgtcaatattattacctttatgcaatgctgggagacagtttgtgttggtcacgtggttcagcctcggttctatgtgtcagttgtagcctggtactgcttccaatgtgtcgcaacgtgttggcgctgatcaggaactctaataagattgttaaccgtgtatttggacgcctgctggacagaaatatctggtttcacaaggcatgcgcacttgtgatcattatttcagcagggattcatatcggagcccatgttgtaaatgctaggagattttctatcaattacagttttaatttcacggatttaaacttcgcctcataccctaatcaggaaccgttagaaatgtttgttacctcaagtaagattataacgtctaccactgctgtgaggcgcgcgtcgtacgaaatgttttggtatacccatcatctgtttatcgtgttctttttacttctgtttgttcacggttttggtggagtaataaaacaccaagtaaacctggacacacactcacccggatgtaatatgactaagaataaaaccaatcagggtggaaatatcagtcacgtggtatggtgctcagaagatccagtgttccaggctgataagccagagacctgggtatggtgcgttgggccgctttttgtttacataacggagcgcctgataagggcttttagaagttttcaaaaagtggaactaatgcaggtggttgaacatagcgatagagtcgtggaagtaaaaatgaaaaaggacaattttacagctgaacctggacagtacgtgttcatcaaatgcgcagatgtatcaagattcgagtggcatccgttctcactgacacagtgtccttcatcagaagatacatcattctccatacattgtaagatcctaggaaactggaccgagaaatttgctgatatgctgtttctagcgagatcggactgggaacaaaacaagaaaactctaacttgttcgatacaaaatggagaatactttagttctacgagacctgatgttaaaattgctgttgatggaccttatggaagcccatgcatggatgtttggaggtacgacgtcagtctttgtatagcgacaggaattggtgtcactccattcgctgcactcatcaatgaactcagacacaagataaaaacaaggaaacctttgcagctcaacagactgtattttgtgtgggtttgtaaacacgtagagtcctttcaatggtttgtggaccttttacactccgcccacaaggagctttgggagagtaaccaaccagatttccttatatgtaacttttacgtcacaggatcgcagtcagaagatcaggttttcatgaacttgaaacagcccaacggttggcttacaagcagactgcatcaaaataaaccctcatggaaagccatgtttgaccgagtaagccgcgaaaatccaaggaccaaggttggagtattttactgtggaagtaaaaaagtcacctcggtattgaaaaagaccagtcagcggttctacccaactagaacaagattcatcttcaataaagaacttttaacttag

Transcript

evm.model.Ap6.2287

ATGGCGGAAAATGAAGAAGCGAGCAAGAGAAAAAGCGAAGAAGAAGTAGACGCCAGCGAGGCTGCACCAAAACGAGTACGATTGGAATCGCAAGATCTGAAGGAAATGTCGAAAGAGGACATTTTGGAAAGGGTTAAGCAGTTGGATGGTTATGTTGATCACCTGGAAAAGAAGCAAAATGGAGAACAAGCAAATAAAGAACTAGCTGGACTCTTGGAGACCGGAGAGAAGCTAAAACAACAACAGCAAGAATCCACAAGGCGCGAGAATGTGTTGGTGATGAGGCTTGCTACAAAGGAACAAGAAATGCAAGATCTACTGACTCAAATCCACGATTTAAAACAAGCTCAAAATCCATCCTCGATACAGCTGCGTTCAACGTTACTGGATCCTGCAGTAAATTTGTTGTTTCAACGAATGAAAACGGACTTGGACTCTGAAAAGGAGAAACTGGAACAAGCACAGAATGACCTCAGCGCCTGGAAGTTTACTCCTGACAGTGTTACTGGCAAGAAACTGATGGCAAAATGCCGCATGTTAATCCAGGAAAATCAAGAGCTTGGTCGCCAGTTATCTCAGGGACGAGTAGCGCAGCTGGAAGCTGAGCTTGCTCTTCAGAAAAAATACAGCGACGAGCTGAAAGGCAGTCAAGATGAGTTGAATGACTTCGTTATCCAGCTGGACGAGGAAGTAGAAGGTATGCAGTCGACCATCTTAACTCTTCAGCACCAACTGAAAGACTGCAAACAGCAATTGACTCAATCACAGGAGAACGCGCAGCTTTACGAAGAAAAACTAAAGACCACTGAAAGATTGCTGGATGAAATGCGCCAGCAGAACTCACCTGTCAGCGTAAAGTCAGAGGACCAAGACGAGCATGCGCAAACGCTAACGCAGCCGTCGCAGGCAGATGTTTGGACCGCGGGCGTTGAAAGCGCGCCAAGCGATAGAACATCCCCCGCCGCGCAAGTCGAGGAAAGCAAAGAAAGCGAAGAAAGGATACTGCTTAGCGCTGTTGTAACTGTCCCTACGAAACCCGCAGCCGGCGTGCCCTCGGCGTTTTCTATCAGCCAGTTGCTAGCGACTGACTCGAACCTTGGGAAGGAGGTTAAAGAGCGAAACACTTTAGAGAACGGCGGAAGCCGACACGAAAGCCCGCCATTAGAACCCACTGAAATGACTGAATCCCCGCTAGTCGCGGCCATGGGATTGGTGGAGAGGATTGGGTGTGACTCAAATACTTTCAATGGGGAGGTCATAATATCAGCGGTCTTTGTGGCATTTTTCCTGGGTTCTTACAACAAGTACAGATCTTGCCGTCAATATTATTACCTTTATGCAATGCTGGGAGACAGTTTGTGTTGGTCACGTGGTTCAGCCTCGGTTCTATGTGTCAGTTGTAGCCTGGTACTGCTTCCAATGTGTCGCAACGTGTTGGCGCTGATCAGGAACTCTAATAAGATTGTTAACCGTGTATTTGGACGCCTGCTGGACAGAAATATCTGGTTTCACAAGGCATGCGCACTTGTGATCATTATTTCAGCAGGGATTCATATCGGAGCCCATGTTGTAAATGCTAGGAGATTTTCTATCAATTACAGTTTTAATTTCACGGATTTAAACTTCGCCTCATACCCTAATCAGGAACCGTTAGAAATGTTTGTTACCTCAAGTAAGATTATAACGTCTACCACTGCTGTGAGGCGCGCGTCGTACGAAATGTTTTGGTATACCCATCATCTGTTTATCGTGTTCTTTTTACTTCTGTTTGTTCACGGTTTTGGTGGAGTAATAAAACACCAAGTAAACCTGGACACACACTCACCCGGATGTAATATGACTAAGAATAAAACCAATCAGGGTGGAAATATCAGTCACGTGGTATGGTGCTCAGAAGATCCAGTGTTCCAGGCTGATAAGCCAGAGACCTGGGTATGGTGCGTTGGGCCGCTTTTTGTTTACATAACGGAGCGCCTGATAAGGGCTTTTAGAAGTTTTCAAAAAGTGGAACTAATGCAGGTGGTTGAACATAGCGATAGAGTCGTGGAAGTAAAAATGAAAAAGGACAATTTTACAGCTGAACCTGGACAGTACGTGTTCATCAAATGCGCAGATGTATCAAGATTCGAGTGGCATCCGTTCTCACTGACACAGTGTCCTTCATCAGAAGATACATCATTCTCCATACATTGTAAGATCCTAGGAAACTGGACCGAGAAATTTGCTGATATGCTGTTTCTAGCGAGATCGGACTGGGAACAAAACAAGAAAACTCTAACTTGTTCGATACAAAATGGAGAATACTTTAGTTCTACGAGACCTGATGTTAAAATTGCTGTTGATGGACCTTATGGAAGCCCATGCATGGATGTTTGGAGGTACGACGTCAGTCTTTGTATAGCGACAGGAATTGGTGTCACTCCATTCGCTGCACTCATCAATGAACTCAGACACAAGATAAAAACAAGGAAACCTTTGCAGCTCAACAGACTGTATTTTGTGTGGGTTTGTAAACACGTAGAGTCCTTTCAATGGTTTGTGGACCTTTTACACTCCGCCCACAAGGAGCTTTGGGAGAGTAACCAACCAGATTTCCTTATATGTAACTTTTACGTCACAGGATCGCAGTCAGAAGATCAGGTTTTCATGAACTTGAAACAGCCCAACGGTTGGCTTACAAGCAGACTGCATCAAAATAAACCCTCATGGAAAGCCATGTTTGACCGAGTAAGCCGCGAAAATCCAAGGACCAAGGTTGGAGTATTTTACTGTGGAAGTAAAAAAGTCACCTCGGTATTGAAAAAGACCAGTCAGCGGTTCTACCCAACTAGAACAAGATTCATCTTCAATAAAGAACTTTTAACTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q924V1	NADPH oxidase 4 OS=Rattus norvegicus OX=10116 GN=Nox4 PE=1 SV=2
Q9JHI8	NADPH oxidase 4 OS=Mus musculus OX=10090 GN=Nox4 PE=1 SV=1
Q5R5C5	NADPH oxidase 4 OS=Pongo abelii OX=9601 GN=NOX4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004659 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01794 all species →	Ferric_reduct	Ferric reductase like transmembrane component	Family	Interproscan
PF08022 all species →	FAD_binding_8	FAD-binding domain	Domain	Interproscan
PF08030 all species →	NAD_binding_6	Ferric reductase NAD binding domain	Domain	Interproscan
PF17098 all species →	Wtap	WTAP/Mum2p family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR013130 all species →	Domain	Ferric reductase transmembrane component-like domain	Interproscan
IPR013112 all species →	Domain	FAD-binding 8	Interproscan
IPR013121 all species →	Domain	Ferric reductase, NAD binding domain	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR033757 all species →	Family	Pre-mRNA-splicing regulator WTAP	Interproscan
IPR000778 all species →	Family	Cytochrome b245, heavy chain	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR050369 all species →	Family	Respiratory burst oxidase/Ferric reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11972 all species →	NADPH OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0080009 all species →	Biological Process	obsolete mRNA methylation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006952 all species →	Biological Process	defense response	Interproscan
GO:0016175 all species →	Molecular Function	superoxide-generating NAD(P)H oxidase activity	Interproscan
GO:0042554 all species →	Biological Process	superoxide anion generation	Interproscan
GO:0043020 all species →	Cellular Component	NADPH oxidase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.2287.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.