Gene detail

Detailed information of evm.model.Ap6.234 in Astrangia poculata

Genomic Location: Ap6:2134780...2145664
NR annotation: XP_020628162.1, cellular tumor antigen p53-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JJP2	Tumor protein p73 OS=Mus musculus OX=10090 GN=Tp73 PE=1 SV=1
O15350	Tumor protein p73 OS=Homo sapiens OX=9606 GN=TP73 PE=1 SV=1
Q9XSK8	Tumor protein p73 OS=Chlorocebus aethiops OX=9534 GN=TP73 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000826 (this species only)
Transcription factor family	P53 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00870 all species →	P53	P53 DNA-binding domain	Domain	Interproscan
PF07710 all species →	P53_tetramer	P53 tetramerisation motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011615 all species →	Domain	p53, DNA-binding domain	Interproscan
IPR036674 all species →	Homologous_superfamily	p53-like tetramerisation domain superfamily	Interproscan
IPR002117 all species →	Family	p53 tumour suppressor family	Interproscan
IPR010991 all species →	Domain	p53, tetramerisation domain	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR012346 all species →	Homologous_superfamily	p53/RUNT-type transcription factor, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11447 all species →	CELLULAR TUMOR ANTIGEN P53	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0051262 all species →	Biological Process	protein tetramerization	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10149	TP63; tumor protein p63	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.