Gene detail

Detailed information of evm.model.Ap6.2346 in Astrangia poculata

Genomic Location: Ap6:22961811...22979979
NR annotation: XP_020622018.1, serine/arginine repetitive matrix protein 1-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.2346

atggcggacgctggtttctttcggggcacaagtgcggaacaggacaaccgatttcttgacaagcagaagaagttgttaaaatcgatgcgttttgacgatgttctaaataaaaaggttgacatggaaaaagtgaatcttgatgtaataaaaccttggataacaaagaagttgattgagatccttggagttgaagatgacgtggttatgcagtatgttttaaatatgctggagtcagaaaagaatcctgatccaaggtttatgcagattaacataactgggttcctgcagtccaaaaatgctcgggaatttatgaaggagctgtggagtcttcttgtgagtgcacaagaaaacataggagggattccttctacattcttggagaaaaaaaaagaagaaatcaaacaaagaaagctggaacaggaacgcattcaagctaacttacaaaaataccaaggagatcagcaacaaacagaaccagacagcacagcgacagatgacctagtagccaatgaaaatggatcagctgctgcgacaggtgacatcagtgaagaaatacgaaaagccaaagaagtggcacaggcattagcaggaaaagataacagccctaaaagaggatacaaaaaatccaagcgtaactcagatcactcagacagcgatgatagtgacgacgaaggggcagctagaaaaatgaaagaagctggcaaaaacactgaagaaaaagcagagaggactgagcctatttcagcagtgaaagtaaaaaaggaaaaagattcagatgagagatcacccagtaagctgcttcagccgaaatggaggtcacgccttatgtcatcagctgcacggccagtcgacagagagaaacccggatgggacaaagaacatatgcaaaatgttgctttcactaacacaccagatgtaaatgttgtcttaactggagattccattattaaaggcctgactcgttacacctggatctggaaaaagtactttgcccccctcaaatcccttaactttggtattggtggtgacagaacacagcacgttttgtggcgacttcaaaatggagagatcgagtgtgatccaaaagtatttgtggtactttgtggcacaaacaatgtggacaaaaatggtgcaagtgaaatcgcacagggaattttggccattgttgatttcattcgtaacaaaaagccaaaagtaagcattgttgtctgcgggattctcccaagggatttattccctaattcacgacgagacaaaattgatgaagtcaacgaggagctgtttgagtacataagcttttcagatgagctgcgtgatgagaatgtttatttcctgccaccagggaagggctggacttctaagggaggcaagctcgatgaatccctttacttcactgatcacttgcatcttgtggaggacggagatgagaagcttgctaaagcaattgctcgtttggtgaaagagcttcttgaggctgatgagtctgaagaacttgacagctctgtttctcgtaagaagcagatcaagcaaaaagagattgaagaagctcaaaaggctaaaaaagaagctgctgaagagaaagatgccaaaagagaccattccagctctcgttcacggtcaaggtcgcgctcaggagaaagaaaacgatcaggtgacaagaaaggacgcaagcgcagtcggtccaagtcctccgcttctcgctcacgttcccggtcatattctaagtcacggtcacgcagtcgggaaagacgaagacggtctcgttctcgctcgccccgtcgtgtttcttcgtacaaccgaggtcggtggtcgcccttcagacgtcgcaacgcgccatctccaagaaggtggtcgcctcctagacgaaggtcaccgcctcgccgaaggtctcgttctcggtcaccgcgccgaaagccacgtcgatctccatctcctcgacgccggtcacgctctgaatcagcatcgtcacgctctgcaagtttcagctcgcgttcgtcacgctcgcgctcaggctctcctcgtgccgaaacatcacgtaaagagaaaaaagagaagggtaaagacaaggaaaaggaggtcaaaaaggaaaaagaggaacagaaagaggatgataaaggaaaagaaaaggagaagtctccgagtcccgcaaaaactaaagctaaggggtctccaagtccgccgcccacgcatcaccgatcaacttacaaaaaacaggaacaacaacagtcgcctgtaaaacagccttccccgtcatcatcgtcatcatctgcctcacccccaccccctgaggtcaagcaagagaaagaagagaaggaggagaaagagaaatcaccgccattacccaaatccaaaaaaactacaagtcgccgctaccgcaaacactcaccatcaccctcctcatcagaaggggagtggtcaccagagagaaagaagaaaactgactcttctaaagatcgcaggaaggaacgagagagaagtgagtctccacgagataggaggaggaagcgcaaggattcctcaccctcccccagaaagagaagaagagacgactcacgatcaccctcccctcccagacgaaaccgaagagaacattcccgtacaccgtctcctccccgaagacgacgccaggataatcgctcctcttcccccagaaggaggagaaaatccgacttctcgccatcaccccccagggaaagacgtcgacgaccggagccatccccgccacgaagcagagaacgtagaaaagaaaggatgtcacccccgccccctcgtagacgccgtcggtcaagttcgtcgcctcccgcgactcgtcgggtagagtcgtcaccaccatcgggtcgccgtcggatggagaggtcgcgatcagacgataaagcgcggaaagagcgtcgccgatctccagagcccgagaaagaagctggtcggagaaggaagcgttccgagagatctcggtcgtcctctggctcgccagagcccccacagaaatctcaggccgagactgagtcggcgaagaagtcaaagacacgtgaagcaagacgatcatcgtcatcttctgcctctcccgaaccgccgccgacttctgagaaaaagatatcgagagatactcgagaatctcccgtcagatcccctcctaaagagccatccagatcgaaaggcgagcggaagagacggtcgcgttcggcctcgcctcgcgtggatagtcgggatcgcagacgagtggtacagaagtcaccttccatgtcacccgaaagacccaaaagtcgaaaatcagcccaagttgagtcggcctcgcctgtccgtaaaaccaagtctcgtacaaagcgctcggcgtcagcctcgcctccacctaaggctgccaggacccacggctcaagacgttcaccttcattgtctcctgaaccagaagttaaacccaaatctcgcgctgccaagcaatctcccaaaccgcctgcttcaccagaacctcgtcaacaaccccgctcggccaagcgaagtccctcgggatctccgccacgtgaacgggtcaagcgtaaggcagctgtcaaaaggtcgtcaagtgaggacaagtctccagagccccccgccagaaaggcccgccgaagcccctctgtacctgaagaagaggcaccaaagaagtctcctagtaaatcgccgccacctgctaaggaggaaagttcaggggaggaacaagagaaacctgaagaaaaggaacccaaaggagaaaagaagaagaaacataagaaacacaagaaacatggcggctcaaaacacaaacacaagcgttcaaaacataagaaacataaagaaaaagacaagtcacctgggcactcggaaagtatggacgaagatgatacagaaaccctggagagaaaactgagagagaaagctttacagtccatgcagaaacacgctaaatcacctgaagagacagctgaacacgacgatgattga

Transcript

evm.model.Ap6.2346

ATGGCGGACGCTGGTTTCTTTCGGGGCACAAGTGCGGAACAGGACAACCGATTTCTTGACAAGCAGAAGAAGTTGTTAAAATCGATGCGTTTTGACGATGTTCTAAATAAAAAGGTTGACATGGAAAAAGTGAATCTTGATGTAATAAAACCTTGGATAACAAAGAAGTTGATTGAGATCCTTGGAGTTGAAGATGACGTGGTTATGCAGTATGTTTTAAATATGCTGGAGTCAGAAAAGAATCCTGATCCAAGGTTTATGCAGATTAACATAACTGGGTTCCTGCAGTCCAAAAATGCTCGGGAATTTATGAAGGAGCTGTGGAGTCTTCTTGTGAGTGCACAAGAAAACATAGGAGGGATTCCTTCTACATTCTTGGAGAAAAAAAAAGAAGAAATCAAACAAAGAAAGCTGGAACAGGAACGCATTCAAGCTAACTTACAAAAATACCAAGGAGATCAGCAACAAACAGAACCAGACAGCACAGCGACAGATGACCTAGTAGCCAATGAAAATGGATCAGCTGCTGCGACAGGTGACATCAGTGAAGAAATACGAAAAGCCAAAGAAGTGGCACAGGCATTAGCAGGAAAAGATAACAGCCCTAAAAGAGGATACAAAAAATCCAAGCGTAACTCAGATCACTCAGACAGCGATGATAGTGACGACGAAGGGGCAGCTAGAAAAATGAAAGAAGCTGGCAAAAACACTGAAGAAAAAGCAGAGAGGACTGAGCCTATTTCAGCAGTGAAAGTAAAAAAGGAAAAAGATTCAGATGAGAGATCACCCAGTAAGCTGCTTCAGCCGAAATGGAGGTCACGCCTTATGTCATCAGCTGCACGGCCAGTCGACAGAGAGAAACCCGGATGGGACAAAGAACATATGCAAAATGTTGCTTTCACTAACACACCAGATGTAAATGTTGTCTTAACTGGAGATTCCATTATTAAAGGCCTGACTCGTTACACCTGGATCTGGAAAAAGTACTTTGCCCCCCTCAAATCCCTTAACTTTGGTATTGGTGGTGACAGAACACAGCACGTTTTGTGGCGACTTCAAAATGGAGAGATCGAGTGTGATCCAAAAGTATTTGTGGTACTTTGTGGCACAAACAATGTGGACAAAAATGGTGCAAGTGAAATCGCACAGGGAATTTTGGCCATTGTTGATTTCATTCGTAACAAAAAGCCAAAAGTAAGCATTGTTGTCTGCGGGATTCTCCCAAGGGATTTATTCCCTAATTCACGACGAGACAAAATTGATGAAGTCAACGAGGAGCTGTTTGAGTACATAAGCTTTTCAGATGAGCTGCGTGATGAGAATGTTTATTTCCTGCCACCAGGGAAGGGCTGGACTTCTAAGGGAGGCAAGCTCGATGAATCCCTTTACTTCACTGATCACTTGCATCTTGTGGAGGACGGAGATGAGAAGCTTGCTAAAGCAATTGCTCGTTTGGTGAAAGAGCTTCTTGAGGCTGATGAGTCTGAAGAACTTGACAGCTCTGTTTCTCGTAAGAAGCAGATCAAGCAAAAAGAGATTGAAGAAGCTCAAAAGGCTAAAAAAGAAGCTGCTGAAGAGAAAGATGCCAAAAGAGACCATTCCAGCTCTCGTTCACGGTCAAGGTCGCGCTCAGGAGAAAGAAAACGATCAGGTGACAAGAAAGGACGCAAGCGCAGTCGGTCCAAGTCCTCCGCTTCTCGCTCACGTTCCCGGTCATATTCTAAGTCACGGTCACGCAGTCGGGAAAGACGAAGACGGTCTCGTTCTCGCTCGCCCCGTCGTGTTTCTTCGTACAACCGAGGTCGGTGGTCGCCCTTCAGACGTCGCAACGCGCCATCTCCAAGAAGGTGGTCGCCTCCTAGACGAAGGTCACCGCCTCGCCGAAGGTCTCGTTCTCGGTCACCGCGCCGAAAGCCACGTCGATCTCCATCTCCTCGACGCCGGTCACGCTCTGAATCAGCATCGTCACGCTCTGCAAGTTTCAGCTCGCGTTCGTCACGCTCGCGCTCAGGCTCTCCTCGTGCCGAAACATCACGTAAAGAGAAAAAAGAGAAGGGTAAAGACAAGGAAAAGGAGGTCAAAAAGGAAAAAGAGGAACAGAAAGAGGATGATAAAGGAAAAGAAAAGGAGAAGTCTCCGAGTCCCGCAAAAACTAAAGCTAAGGGGTCTCCAAGTCCGCCGCCCACGCATCACCGATCAACTTACAAAAAACAGGAACAACAACAGTCGCCTGTAAAACAGCCTTCCCCGTCATCATCGTCATCATCTGCCTCACCCCCACCCCCTGAGGTCAAGCAAGAGAAAGAAGAGAAGGAGGAGAAAGAGAAATCACCGCCATTACCCAAATCCAAAAAAACTACAAGTCGCCGCTACCGCAAACACTCACCATCACCCTCCTCATCAGAAGGGGAGTGGTCACCAGAGAGAAAGAAGAAAACTGACTCTTCTAAAGATCGCAGGAAGGAACGAGAGAGAAGTGAGTCTCCACGAGATAGGAGGAGGAAGCGCAAGGATTCCTCACCCTCCCCCAGAAAGAGAAGAAGAGACGACTCACGATCACCCTCCCCTCCCAGACGAAACCGAAGAGAACATTCCCGTACACCGTCTCCTCCCCGAAGACGACGCCAGGATAATCGCTCCTCTTCCCCCAGAAGGAGGAGAAAATCCGACTTCTCGCCATCACCCCCCAGGGAAAGACGTCGACGACCGGAGCCATCCCCGCCACGAAGCAGAGAACGTAGAAAAGAAAGGATGTCACCCCCGCCCCCTCGTAGACGCCGTCGGTCAAGTTCGTCGCCTCCCGCGACTCGTCGGGTAGAGTCGTCACCACCATCGGGTCGCCGTCGGATGGAGAGGTCGCGATCAGACGATAAAGCGCGGAAAGAGCGTCGCCGATCTCCAGAGCCCGAGAAAGAAGCTGGTCGGAGAAGGAAGCGTTCCGAGAGATCTCGGTCGTCCTCTGGCTCGCCAGAGCCCCCACAGAAATCTCAGGCCGAGACTGAGTCGGCGAAGAAGTCAAAGACACGTGAAGCAAGACGATCATCGTCATCTTCTGCCTCTCCCGAACCGCCGCCGACTTCTGAGAAAAAGATATCGAGAGATACTCGAGAATCTCCCGTCAGATCCCCTCCTAAAGAGCCATCCAGATCGAAAGGCGAGCGGAAGAGACGGTCGCGTTCGGCCTCGCCTCGCGTGGATAGTCGGGATCGCAGACGAGTGGTACAGAAGTCACCTTCCATGTCACCCGAAAGACCCAAAAGTCGAAAATCAGCCCAAGTTGAGTCGGCCTCGCCTGTCCGTAAAACCAAGTCTCGTACAAAGCGCTCGGCGTCAGCCTCGCCTCCACCTAAGGCTGCCAGGACCCACGGCTCAAGACGTTCACCTTCATTGTCTCCTGAACCAGAAGTTAAACCCAAATCTCGCGCTGCCAAGCAATCTCCCAAACCGCCTGCTTCACCAGAACCTCGTCAACAACCCCGCTCGGCCAAGCGAAGTCCCTCGGGATCTCCGCCACGTGAACGGGTCAAGCGTAAGGCAGCTGTCAAAAGGTCGTCAAGTGAGGACAAGTCTCCAGAGCCCCCCGCCAGAAAGGCCCGCCGAAGCCCCTCTGTACCTGAAGAAGAGGCACCAAAGAAGTCTCCTAGTAAATCGCCGCCACCTGCTAAGGAGGAAAGTTCAGGGGAGGAACAAGAGAAACCTGAAGAAAAGGAACCCAAAGGAGAAAAGAAGAAGAAACATAAGAAACACAAGAAACATGGCGGCTCAAAACACAAACACAAGCGTTCAAAACATAAGAAACATAAAGAAAAAGACAAGTCACCTGGGCACTCGGAAAGTATGGACGAAGATGATACAGAAACCCTGGAGAGAAAACTGAGAGAGAAAGCTTTACAGTCCATGCAGAAACACGCTAAATCACCTGAAGAGACAGCTGAACACGACGATGATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q52KI8	Serine/arginine repetitive matrix protein 1 OS=Mus musculus OX=10090 GN=Srrm1 PE=1 SV=2
Q5ZMJ9	Serine/arginine repetitive matrix protein 1 OS=Gallus gallus OX=9031 GN=SRRM1 PE=2 SV=1
Q8IYB3	Serine/arginine repetitive matrix protein 1 OS=Homo sapiens OX=9606 GN=SRRM1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001370 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13472 all species →	Lipase_GDSL_2	GDSL-like Lipase/Acylhydrolase family	Domain	Interproscan
PF01480 all species →	PWI	PWI domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013830 all species →	Domain	SGNH hydrolase-type esterase domain	Interproscan
IPR036483 all species →	Homologous_superfamily	PWI domain superfamily	Interproscan
IPR052225 all species →	Family	Serine/arginine repetitive matrix	Interproscan
IPR036514 all species →	Homologous_superfamily	SGNH hydrolase superfamily	Interproscan
IPR002483 all species →	Domain	PWI domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23148 all species →	SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.2346.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.