Gene detail

Detailed information of evm.model.Ap6.238 in Astrangia poculata

Genomic Location: Ap6:2175758...2185769
NR annotation: XP_020628151.1, von Willebrand factor A domain-containing protein 5B1-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.238

atgactggacttgtgaaccggcatacaaattctacactacagttaaaggcatcgagcatctttgccgaggtaaatggttttgcggcgcgagttctagcgacgttaacttattgcaatgactgtgaatacgatgtagaaggactatttattttcccacaagatgaaagagctacggtggtcgaattcgaagcgacgatcgaggaacgccatgtcagcacacaagtttcggagaccatcacacgcaattctgaaaagcacgcgttcgctttagaagagcgcgacgatgatctattttcgctgagtttggggagaattcctccactcacttctgtatttgttcaagtgactctgattacagagcttggaaccgatgaaacgactggcgggtcgctgtttattctgccgtcggtttttactccgcggctcgcgagcgacgagaacgaagaaacagatttgtacggctcacaaatgctcattacgaaccttcctcgcaagacgcaggagccttacagcttcgagcttcagctagaagtggccgcgccgtgtttattagccgggtgctcgtctcgaacgcacgcaatccaagtcgacgcggattgccgggcaacgaacgcttcccggattcacatcacgatagccgaggcgcacacatacgacagagaacttgaggtcgtacttcatctctcgcacccgtacgacccttacgtcttgatcgaggaaggaaagaaaggttataactcactgcgcgcccaagaaaaaatggacagctcaaaccagtcggatactctggaagactttcacaagaaagcagcgatcatgatcaactataccccaaggctacccactttgagcgccgtaggagaatacatcttccttgtcgaccgcagtggaagtatgagcggagatcacatttttcacgtcaaagaaacgctgattctcttcctcaaaagcttgcccacaaactgttattttaatgtcatcgggttcggctcttactatcgaagtttgtttcaagatagccaaccttacaacgaaacgacgcttggaaaagcctgtgcttatgtgcacaaaatgagagccgatttgggcggttcaaatctgcttctgcccttagaattcatctttgaaaaacccacaagacttggagtgggaagaacagtgtttatgttgaccgatggtggtatatcgaatactttagaggtcgtggattttgtgcgccgaaattcctatacaacgcggttttacacgtttggaattggaccggaagcttgtcccaacctggtgcaaggtgtggcaggagcggggaggggtcaggcgtactttatagcagatgatgagcggatgccagtcaaggtaatggcagcgctcgcggatgcccttcagcccgcgatcacagacctagaggtcagctggcacctccctgacggatacgacgtcatacagaccccacaacttctgccgttcgtgcagaacaacaagcgtttggtgatatatgggattttgtaccgtccccccggcgaggagaaagagtcaccgagaacacccataaaaaggaaaatggactggagcatgaggtcattttcaaacagctctgtcaaagtgttttggtttgaggatgaatgcgatctcctggcggaagatcagctgctgatggagggagatgaatcgccacgcttgagccaggatgactttgaaaaggactacgagttcaaagacgaggcggaggtttctgggcaggatagctttgatgccgagatggaaagcgtttctgaaccggatacgatagaagccattgccgatgggcttctcaaacgcatgtgcagagaatttagcgaagaaaaacccggtgaagatgatcatgaaatcacgcaatctttggttacgcttgaaacaaacggacccattgagtcacgcaatgggggagtcagtgaccacacagatgttaacgaacagaataataatggatttaactcggctagtcaaaagccgccaaaccgtacagtacaagacgatgtcgcatttgaagttgccatgggtagctttttcaatggcatcaaagacagcatagtgcatgcagatgactcagagcacgctgacgaataccgtgagcaccagaggtcgccaaaacttgtgcgcgcctacgagcgggacagcggcgtcggtttcagcatggaggaaaacgagaagagtccagatgaaagcaagaaagccatggctggaataggccaaggtctcgaggaagaagaagcaaccgattggtcacgcgacagtccaacatttgaagaatttgacagcacaaggaaagctgccgttcacattttcaagaacagcgagtttctatcgcaacttggcgtgcctgccgacttcggcgcagtcaacatccggggatttgttggcgaggaggaaatggagcaagtcattccatttccggtgaaccggtgcggcggttcttccaagcgtcccacaatccaccagcttctagcgcgctcgctgatcagggaactgcagtcttcagtggactccaaaagtacggagactattgaaatagtgaaaagaattagcgaactgtctagcgtgcactccaggcacacggctcttgtagcacgtgatcagtattgctatgacgaccaggttttgagtgctttgcagtttccgcagaaggagaatcttccgggcttagggaatcgaaaagtcaaagtactggagcgaagctctggcttcacggagggcctgggtcggcgtctccccagtccagatggcagtgaccaagacatttcgccatatttcgcagagggcgggagcaaccccgttctggagtctggagaagagccagtggacttctatcgccttgaacgaactggtactccagaaagtcaaagcgaagaaactggatcgaaaaaagacactgaaacatctcccagcaaaagtccgcgtaagcacgttcctcctttgtcaacgagatgcgtgttgggcgaaatgcaacaatctgcctcaaaagacaaacccaaactcctctcttcctccagctttgatacctattggagccctgggaccaagcaacatttgtcctttgtgcgcatgatcagtttgcagtccgctcaaggaagctggagtattgattgcgctttcgcggaagtcctgggactgccgctggctggcattcaagaagcgtctccgctggctgataactccgtttatatcgcggacgatcttcaagagctgatggattccgacaagtgcgacaacagttcccagctgtgggctactgcgcttgcgctgagctggttgtatcgaaagaggcgccaattcgaggccgagtggagcctggcggcgaagaaagccgagaattggatgagctcgatcccgtgccctcgcgggttttcgcccgatgatttgaatgctcttgcctaccaagcgcttctgcttctggaaacagaaacgcgaaaaacgcctgacaccgtgcctccagctgggaaaatagacacatcgttatctggaaaactaaaatctcgcagaaatacctggatcttttaa

Transcript

evm.model.Ap6.238

ATGACTGGACTTGTGAACCGGCATACAAATTCTACACTACAGTTAAAGGCATCGAGCATCTTTGCCGAGGTAAATGGTTTTGCGGCGCGAGTTCTAGCGACGTTAACTTATTGCAATGACTGTGAATACGATGTAGAAGGACTATTTATTTTCCCACAAGATGAAAGAGCTACGGTGGTCGAATTCGAAGCGACGATCGAGGAACGCCATGTCAGCACACAAGTTTCGGAGACCATCACACGCAATTCTGAAAAGCACGCGTTCGCTTTAGAAGAGCGCGACGATGATCTATTTTCGCTGAGTTTGGGGAGAATTCCTCCACTCACTTCTGTATTTGTTCAAGTGACTCTGATTACAGAGCTTGGAACCGATGAAACGACTGGCGGGTCGCTGTTTATTCTGCCGTCGGTTTTTACTCCGCGGCTCGCGAGCGACGAGAACGAAGAAACAGATTTGTACGGCTCACAAATGCTCATTACGAACCTTCCTCGCAAGACGCAGGAGCCTTACAGCTTCGAGCTTCAGCTAGAAGTGGCCGCGCCGTGTTTATTAGCCGGGTGCTCGTCTCGAACGCACGCAATCCAAGTCGACGCGGATTGCCGGGCAACGAACGCTTCCCGGATTCACATCACGATAGCCGAGGCGCACACATACGACAGAGAACTTGAGGTCGTACTTCATCTCTCGCACCCGTACGACCCTTACGTCTTGATCGAGGAAGGAAAGAAAGGTTATAACTCACTGCGCGCCCAAGAAAAAATGGACAGCTCAAACCAGTCGGATACTCTGGAAGACTTTCACAAGAAAGCAGCGATCATGATCAACTATACCCCAAGGCTACCCACTTTGAGCGCCGTAGGAGAATACATCTTCCTTGTCGACCGCAGTGGAAGTATGAGCGGAGATCACATTTTTCACGTCAAAGAAACGCTGATTCTCTTCCTCAAAAGCTTGCCCACAAACTGTTATTTTAATGTCATCGGGTTCGGCTCTTACTATCGAAGTTTGTTTCAAGATAGCCAACCTTACAACGAAACGACGCTTGGAAAAGCCTGTGCTTATGTGCACAAAATGAGAGCCGATTTGGGCGGTTCAAATCTGCTTCTGCCCTTAGAATTCATCTTTGAAAAACCCACAAGACTTGGAGTGGGAAGAACAGTGTTTATGTTGACCGATGGTGGTATATCGAATACTTTAGAGGTCGTGGATTTTGTGCGCCGAAATTCCTATACAACGCGGTTTTACACGTTTGGAATTGGACCGGAAGCTTGTCCCAACCTGGTGCAAGGTGTGGCAGGAGCGGGGAGGGGTCAGGCGTACTTTATAGCAGATGATGAGCGGATGCCAGTCAAGGTAATGGCAGCGCTCGCGGATGCCCTTCAGCCCGCGATCACAGACCTAGAGGTCAGCTGGCACCTCCCTGACGGATACGACGTCATACAGACCCCACAACTTCTGCCGTTCGTGCAGAACAACAAGCGTTTGGTGATATATGGGATTTTGTACCGTCCCCCCGGCGAGGAGAAAGAGTCACCGAGAACACCCATAAAAAGGAAAATGGACTGGAGCATGAGGTCATTTTCAAACAGCTCTGTCAAAGTGTTTTGGTTTGAGGATGAATGCGATCTCCTGGCGGAAGATCAGCTGCTGATGGAGGGAGATGAATCGCCACGCTTGAGCCAGGATGACTTTGAAAAGGACTACGAGTTCAAAGACGAGGCGGAGGTTTCTGGGCAGGATAGCTTTGATGCCGAGATGGAAAGCGTTTCTGAACCGGATACGATAGAAGCCATTGCCGATGGGCTTCTCAAACGCATGTGCAGAGAATTTAGCGAAGAAAAACCCGGTGAAGATGATCATGAAATCACGCAATCTTTGGTTACGCTTGAAACAAACGGACCCATTGAGTCACGCAATGGGGGAGTCAGTGACCACACAGATGTTAACGAACAGAATAATAATGGATTTAACTCGGCTAGTCAAAAGCCGCCAAACCGTACAGTACAAGACGATGTCGCATTTGAAGTTGCCATGGGTAGCTTTTTCAATGGCATCAAAGACAGCATAGTGCATGCAGATGACTCAGAGCACGCTGACGAATACCGTGAGCACCAGAGGTCGCCAAAACTTGTGCGCGCCTACGAGCGGGACAGCGGCGTCGGTTTCAGCATGGAGGAAAACGAGAAGAGTCCAGATGAAAGCAAGAAAGCCATGGCTGGAATAGGCCAAGGTCTCGAGGAAGAAGAAGCAACCGATTGGTCACGCGACAGTCCAACATTTGAAGAATTTGACAGCACAAGGAAAGCTGCCGTTCACATTTTCAAGAACAGCGAGTTTCTATCGCAACTTGGCGTGCCTGCCGACTTCGGCGCAGTCAACATCCGGGGATTTGTTGGCGAGGAGGAAATGGAGCAAGTCATTCCATTTCCGGTGAACCGGTGCGGCGGTTCTTCCAAGCGTCCCACAATCCACCAGCTTCTAGCGCGCTCGCTGATCAGGGAACTGCAGTCTTCAGTGGACTCCAAAAGTACGGAGACTATTGAAATAGTGAAAAGAATTAGCGAACTGTCTAGCGTGCACTCCAGGCACACGGCTCTTGTAGCACGTGATCAGTATTGCTATGACGACCAGGTTTTGAGTGCTTTGCAGTTTCCGCAGAAGGAGAATCTTCCGGGCTTAGGGAATCGAAAAGTCAAAGTACTGGAGCGAAGCTCTGGCTTCACGGAGGGCCTGGGTCGGCGTCTCCCCAGTCCAGATGGCAGTGACCAAGACATTTCGCCATATTTCGCAGAGGGCGGGAGCAACCCCGTTCTGGAGTCTGGAGAAGAGCCAGTGGACTTCTATCGCCTTGAACGAACTGGTACTCCAGAAAGTCAAAGCGAAGAAACTGGATCGAAAAAAGACACTGAAACATCTCCCAGCAAAAGTCCGCGTAAGCACGTTCCTCCTTTGTCAACGAGATGCGTGTTGGGCGAAATGCAACAATCTGCCTCAAAAGACAAACCCAAACTCCTCTCTTCCTCCAGCTTTGATACCTATTGGAGCCCTGGGACCAAGCAACATTTGTCCTTTGTGCGCATGATCAGTTTGCAGTCCGCTCAAGGAAGCTGGAGTATTGATTGCGCTTTCGCGGAAGTCCTGGGACTGCCGCTGGCTGGCATTCAAGAAGCGTCTCCGCTGGCTGATAACTCCGTTTATATCGCGGACGATCTTCAAGAGCTGATGGATTCCGACAAGTGCGACAACAGTTCCCAGCTGTGGGCTACTGCGCTTGCGCTGAGCTGGTTGTATCGAAAGAGGCGCCAATTCGAGGCCGAGTGGAGCCTGGCGGCGAAGAAAGCCGAGAATTGGATGAGCTCGATCCCGTGCCCTCGCGGGTTTTCGCCCGATGATTTGAATGCTCTTGCCTACCAAGCGCTTCTGCTTCTGGAAACAGAAACGCGAAAAACGCCTGACACCGTGCCTCCAGCTGGGAAAATAGACACATCGTTATCTGGAAAACTAAAATCTCGCAGAAATACCTGGATCTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5TIE3	von Willebrand factor A domain-containing protein 5B1 OS=Homo sapiens OX=9606 GN=VWA5B1 PE=1 SV=2
A9Z1V5	von Willebrand factor A domain-containing protein 5B1 OS=Mus musculus OX=10090 GN=Vwa5b1 PE=2 SV=1
Q75WE7	von Willebrand factor A domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Vwa5a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001087 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13757 all species →	VIT_2	Vault protein inter-alpha-trypsin domain	Domain	Interproscan
PF13768 all species →	VWA_3	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR013694 all species →	Domain	VIT domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45737 all species →	VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap6.238. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24510	VWA5; von Willebrand factor A domain-containing protein 5	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.