Gene detail

Detailed information of evm.model.Ap6.240 in Astrangia poculata

Genomic Location: Ap6:2193067...2193780
NR annotation: XP_020628139.1, uncharacterized protein LOC110065347 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BYD2	Large ribosomal subunit protein bL9m OS=Homo sapiens OX=9606 GN=MRPL9 PE=1 SV=2
A9X1A9	Large ribosomal subunit protein bL9m OS=Papio anubis OX=9555 GN=MRPL9 PE=3 SV=1
Q2TBK2	Large ribosomal subunit protein bL9m OS=Bos taurus OX=9913 GN=MRPL9 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03948 all species →	Ribosomal_L9_C	Ribosomal protein L9, C-terminal domain	Domain	Interproscan
PF01281 all species →	Ribosomal_L9_N	Ribosomal protein L9, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020069 all species →	Domain	Large ribosomal subunit protein bL9, C-terminal	Interproscan
IPR020070 all species →	Domain	Large ribosomal subunit protein bL9, N-terminal	Interproscan
IPR009027 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9/RNase H1, N-terminal	Interproscan
IPR036935 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9, N-terminal domain superfamily	Interproscan
IPR036791 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9, C-terminal domain superfamily	Interproscan
IPR000244 all species →	Family	Large ribosomal subunit protein bL9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21368 all species →	50S RIBOSOMAL PROTEIN L9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02939	RP-L9, MRPL9, rplI; large subunit ribosomal protein L9	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.