Gene detail

Detailed information of evm.model.Ap6.2473 in Astrangia poculata

Genomic Location: Ap6:24587929...24613081
NR annotation: CAH3121497.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.2473

atgtggagagccaaccgttgcctcctttctcctcagtggaatcatctttcaaggcattgcaaatggtcagttcttaaacgcagtctttgtgcactaaaggaggataacaagtacagttctttggatgctgcaagtcaattaaaaccaggggatagaattcatggatatacagttaataaggttgtgcctgtacctgagctgtttttggtgtctgtgcagctgacacatgacaaaacaggagctcagcatttacacattgctagagatgactccaacaatgttttcagtgttggatttcggactactccaatggacagcacaggtgtttcacatattctggagcacacagctttgtgtggctcacagagctatccagttagagatccattcttcaagatgctcaaccgatctctctctaccttcatgaatgcttttacagccagtgatttcactatgtatcctttctcaacacaaaattccaaagactttcaaaacttgctgtctgtttatctggatgcagccttctttccacaacttagagaacaggatttttggcaggaaggctggcgtttagaacctgaagacttgtcgaaccctgattcaccaatgatctttaaaggagtggtgtttaatgaaatgaaaggtgccatgtcaactcccgagtcactatttgttcatcatgcccagatgaacttgttacccagtcacacatacagtaacaacagtggaggcgaccctctctgtattccagaccttacatggcagcaattaaaggatttccatgcttcacattatcatcccagtaattccaggttctacacttacggagatttaccccttgaaagtcatttagaacacattgagaataaagtcttgcatcactttgacaagattcctgtaacaacagacattcctcgtgaacaacgctggccagaacctcgagaaaagcatgtgacctgccctgcagatccaatggcagcaaacccagacaagcaaactacagtgggaatgcattacttaacaggaagcaccacagatgcatttgagaacttcactatggtcattttgtcatcactcttaatgagtggaccaaactcacccttctaccaatctttaattgctccaaatattgccagctactcaccaggagtggggtatgataatggaacaagggatgcttcattttcgattggtcttcaaggcatcaagaaagatgactacccaatggttgtggaaaccattcacaaaacatttgacaaagttattgaggaaggttttccgtctgaaagaatagaagcagcactgcacagggtggagctggctacaaagcatcagagtagcaactttggacttggactgattatggatgtcactgttcctgaaaggcgtgctctacttgaagttaagtactttccacagcttcatggtataatgtcagcatggaatcacggagcagatccttcagattatctccttatcaatgaccgtgtacagctctttaaggaaaaacttgaaagtggaccattccttcaagacaaagtgaaagagtgtttcaaagacaaccctcattgcctcactcttgtcatgaatcctgatccagagtatgagacagaactcaacaaaaaagaacaggaaaagctgaagagcaaagttagcggtctgtctgaggaagataaaacgtatatttatcaaaaagcgttacgacctcgaccgcgccgtcaaagttttttttttacaaataactcacttttctgtgtcatacataggatgggtgctggtaaccttaactaccgcgagttgtcccagctgatggagatgagaacaggcggcatggcactatcaacacacatctctactcaccacagtgatatgaaagcatttgaacagggtcttgaattttcctctcactgcctcgacaagaaccttcctcacatgttctacttgtgggcagaaatattttccagacctacattgaacgacactgaacgtctgcgcacactcattaacatgctcgcctcagacctagcgatgtctgtctcaaacgcgggacacttgtacgcgatggcactggcggctagttccctgtcccctgcagcacatcttagtgagcagtttggaggactttctcagcacagggagcctcctgaagttcgttag

Transcript

evm.model.Ap6.2473

ATGTGGAGAGCCAACCGTTGCCTCCTTTCTCCTCAGTGGAATCATCTTTCAAGGCATTGCAAATGGTCAGTTCTTAAACGCAGTCTTTGTGCACTAAAGGAGGATAACAAGTACAGTTCTTTGGATGCTGCAAGTCAATTAAAACCAGGGGATAGAATTCATGGATATACAGTTAATAAGGTTGTGCCTGTACCTGAGCTGTTTTTGGTGTCTGTGCAGCTGACACATGACAAAACAGGAGCTCAGCATTTACACATTGCTAGAGATGACTCCAACAATGTTTTCAGTGTTGGATTTCGGACTACTCCAATGGACAGCACAGGTGTTTCACATATTCTGGAGCACACAGCTTTGTGTGGCTCACAGAGCTATCCAGTTAGAGATCCATTCTTCAAGATGCTCAACCGATCTCTCTCTACCTTCATGAATGCTTTTACAGCCAGTGATTTCACTATGTATCCTTTCTCAACACAAAATTCCAAAGACTTTCAAAACTTGCTGTCTGTTTATCTGGATGCAGCCTTCTTTCCACAACTTAGAGAACAGGATTTTTGGCAGGAAGGCTGGCGTTTAGAACCTGAAGACTTGTCGAACCCTGATTCACCAATGATCTTTAAAGGAGTGGTGTTTAATGAAATGAAAGGTGCCATGTCAACTCCCGAGTCACTATTTGTTCATCATGCCCAGATGAACTTGTTACCCAGTCACACATACAGTAACAACAGTGGAGGCGACCCTCTCTGTATTCCAGACCTTACATGGCAGCAATTAAAGGATTTCCATGCTTCACATTATCATCCCAGTAATTCCAGGTTCTACACTTACGGAGATTTACCCCTTGAAAGTCATTTAGAACACATTGAGAATAAAGTCTTGCATCACTTTGACAAGATTCCTGTAACAACAGACATTCCTCGTGAACAACGCTGGCCAGAACCTCGAGAAAAGCATGTGACCTGCCCTGCAGATCCAATGGCAGCAAACCCAGACAAGCAAACTACAGTGGGAATGCATTACTTAACAGGAAGCACCACAGATGCATTTGAGAACTTCACTATGGTCATTTTGTCATCACTCTTAATGAGTGGACCAAACTCACCCTTCTACCAATCTTTAATTGCTCCAAATATTGCCAGCTACTCACCAGGAGTGGGGTATGATAATGGAACAAGGGATGCTTCATTTTCGATTGGTCTTCAAGGCATCAAGAAAGATGACTACCCAATGGTTGTGGAAACCATTCACAAAACATTTGACAAAGTTATTGAGGAAGGTTTTCCGTCTGAAAGAATAGAAGCAGCACTGCACAGGGTGGAGCTGGCTACAAAGCATCAGAGTAGCAACTTTGGACTTGGACTGATTATGGATGTCACTGTTCCTGAAAGGCGTGCTCTACTTGAAGTTAAGTACTTTCCACAGCTTCATGGTATAATGTCAGCATGGAATCACGGAGCAGATCCTTCAGATTATCTCCTTATCAATGACCGTGTACAGCTCTTTAAGGAAAAACTTGAAAGTGGACCATTCCTTCAAGACAAAGTGAAAGAGTGTTTCAAAGACAACCCTCATTGCCTCACTCTTGTCATGAATCCTGATCCAGAGTATGAGACAGAACTCAACAAAAAAGAACAGGAAAAGCTGAAGAGCAAAGTTAGCGGTCTGTCTGAGGAAGATAAAACGTATATTTATCAAAAAGCGTTACGACCTCGACCGCGCCGTCAAAGTTTTTTTTTTACAAATAACTCACTTTTCTGTGTCATACATAGGATGGGTGCTGGTAACCTTAACTACCGCGAGTTGTCCCAGCTGATGGAGATGAGAACAGGCGGCATGGCACTATCAACACACATCTCTACTCACCACAGTGATATGAAAGCATTTGAACAGGGTCTTGAATTTTCCTCTCACTGCCTCGACAAGAACCTTCCTCACATGTTCTACTTGTGGGCAGAAATATTTTCCAGACCTACATTGAACGACACTGAACGTCTGCGCACACTCATTAACATGCTCGCCTCAGACCTAGCGATGTCTGTCTCAAACGCGGGACACTTGTACGCGATGGCACTGGCGGCTAGTTCCCTGTCCCCTGCAGCACATCTTAGTGAGCAGTTTGGAGGACTTTCTCAGCACAGGGAGCCTCCTGAAGTTCGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28BR5	Presequence protease, mitochondrial OS=Xenopus tropicalis OX=8364 GN=pitrm1 PE=2 SV=1
Q6PF24	Presequence protease, mitochondrial OS=Xenopus laevis OX=8355 GN=pitrm1 PE=2 SV=1
Q5JRX3	Presequence protease, mitochondrial OS=Homo sapiens OX=9606 GN=PITRM1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003537 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05193 all species →	Peptidase_M16_C	Peptidase M16 inactive domain	Domain	Interproscan
PF08367 all species →	M16C_assoc	Peptidase M16C associated	Family	Interproscan
PF00675 all species →	Peptidase_M16	Insulinase (Peptidase family M16)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007863 all species →	Domain	Peptidase M16, C-terminal	Interproscan
IPR011249 all species →	Homologous_superfamily	Metalloenzyme, LuxS/M16 peptidase-like	Interproscan
IPR013578 all species →	Domain	Peptidase M16C associated	Interproscan
IPR011765 all species →	Domain	Peptidase M16, N-terminal	Interproscan
IPR001431 all species →	Binding_site	Peptidase M16, zinc-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43016 all species →	PRESEQUENCE PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0016485 all species →	Biological Process	protein processing	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.2473.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.