Gene detail

Detailed information of evm.model.Ap6.2494 in Astrangia poculata

Genomic Location: Ap6:24790597...24827067
NR annotation: XP_027052523.1, structural maintenance of chromosomes protein 6-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.2494

atggcgcgaaagcggaggctgcaatcagatagcgaagacgaacaacaagaagatctagaaacgcaggaggaatcgcctcaagccaagaaaaagagagtttcatcggctaaagatgtcgatgaagatgagactatgggagaagatgaattagactgctcacaggcaccagatttccctgtgtcgacgtcgtctgaagcagaagttggaatcattgagaagatcacccttgtgaattttatgtgccacaccatgctggaagtacctcttggtgctaatgtgaattttatcataggaagaaatggaagtggtaaaagtgctataatgacagcattggtggtaggattaggaggaaaggctgctacaactaacagaggaagttctctcaagggattcatcaaggacaagtgcggggatgtcgctatgggccggctgccagttaactctagtggaacagtgaacaacacagtatggggtagaggaaagggcccagaaaagcaggcccttccatttattgaaaataaatctgcccatgcagaactggaacataacaacataacagtatcgatcaagctacgaaacagagggcaagatgcatataaacccaaaaaatatggagagaccataacagtggaaagaagaattagcagtgatggcagcggctcttacaagctcaaatcacatgatggcaaagtggtttctcagaaaaaggatgagctaaatcacattctggaccagtttaatatccaggtggataacccagtatctgtgttaaatcaagacaccagcagaaactttctgaactcttcagatcccaaggataaatacaagttttttcttaaagctacccagctagagcaaatgagtacagattatcagctgattattgaacagcaggatattatcaaaaatactttagacaggaaacaagagacacttccagccatgcaacataaggtgcagcaactggaggagaagtacaaagacatcgcacagctgaagaacatgaaagaacaagttgaagacctcaagaaggaacgggtgtgggcggaagttatagaggctgaaaagaaacttggtcctttagcaaaagaagaagacaatcagaaggctaagctgcccagatatgaagagaaagttacagggtgtcaggaagaggtgagaaagttggaagaggagtggaaaaaagttaacgaagagttaaaagctattactgaggagggtagagaattggatggacaacagcaagaaatatgtaatgaattgaagcaaaagaaaaatgtctacagagaaaaacagtcaagattaaggaagctgaagcaagaaaaacacacacaagagaatgaccagaggcagttaatggagagaattcaggagatcagacaaacagctatgcgtgaccttgagtctgagagacaacaaagacaagaagccctccagcaaaaaagagatgaactcaaagcttgggagagtcagctgtcaaccacaaaccatcatcgaggacagttggagcaggctattaacagagcaaaagaaagaacgtaccagctaagaaccgatttgaatgatgcaaatcacagagtggatggagcccagagacagttaagagatcttcaaggcagtcgtaacaacaagcttaaactgtttggctcttgggtgcctgaccttctccaaagagtagagcaagcagaccggaggggaaggtttcatcacagacctgttggccccattggtgcacatctgaccctgaaagatgaaaggtgggctttagccgtggagtcgtgtatcaaaaagtttggctgggcattctgttgccatgacaatcacgaccagcaagttttaaagcagcttttttcacaagtttgcagagataacattccaaccatcattgtcagcaggtttcaggatcatgtccatgatgtctcagccaataaaccaagatccgagttcccgactgtgctagacatgctgttgattgacaatcctgttgtcacaaactgtcttattgaccaggttgctattgagtcagtcttactcatagaggatcccaaagtagcccgtcaagttatgttccagaacccgcctgcaaaagcaagaatggcttatgccatgaatggagatcaactgctcggcgggaagacagctagatcatatgcatccatgatggataaggccagatacctgcagaaagatattgaagtagagatcagacaacttgagcaagagattgagcacaagagacagcatcaacagcagtgccagagggaccttgatgatgttgacagaacaatcagagacaatacgacagagcttaagaaagcaaaacagaaagcgtttcgtgaacaggaggcagtcaataaattccttggtgaaataacagagcttgagaattatgaagaagaagaccttcctgatgttacaacgttggaagaagaagtagagcactacactcagcagttagaagacctggaacaacagactactgtagttgaagaagaggcagagaaagcacaagatgaactgagcaaacaacagcttaaggaaacgcaacacagggagaagatacaaagtttactggaaaaggctgatccatttaggaatcagcaacacgaaattgaagtacagattgagactcaaaagagccacaggaaacactttgaaacacggctcagagaactgcaggattcaatcagaaaagcagagcgagagcatgaagccatgaaaaaactagttagggttaagaccgagcaagcaagccagttttgtgaacgagttgctaccagaaggactgtgaaaagcctcgagactgagataatccaaaagacgaaacgaatacagactgaagaacgaaacaaaggtaaacacgaggatatcacaagagagtactttgaagcaaagaaacggtacgaaggtatcatggagtcactgaagaatctaaaaaaatacagcaagcgtttaaggaaagtaatggaggaccgagcgaaagcgtttgtgaattaccgtcatttcatcgctatccgagctaagttcttcttccaaatgatgctttctcagagaggttacaatggcaagatggtgttcgatcacggcagcgaaattctggggcttcaggtaaatgttgagcagggtatcaaacgggttgccaaggatacgcgttcgttatctggaggagagcgatctttttccaccgtatccttcataatggctctttgggaagcaatggagtcgcccttcagatgtctagatgaattcgatgttttcatggacatggttaacaggcggattagcatggaaatgatgttaaaggtcgccaaagaacaacaagaaaggcagttcattcttctcacgccgcaggacatgagtgccattggaagcagtcgaagtgtgagaatatttagactacgtgatcctgagagagggcagacgacattaaactttcaaccacccgaagcataa

Transcript

evm.model.Ap6.2494

ATGGCGCGAAAGCGGAGGCTGCAATCAGATAGCGAAGACGAACAACAAGAAGATCTAGAAACGCAGGAGGAATCGCCTCAAGCCAAGAAAAAGAGAGTTTCATCGGCTAAAGATGTCGATGAAGATGAGACTATGGGAGAAGATGAATTAGACTGCTCACAGGCACCAGATTTCCCTGTGTCGACGTCGTCTGAAGCAGAAGTTGGAATCATTGAGAAGATCACCCTTGTGAATTTTATGTGCCACACCATGCTGGAAGTACCTCTTGGTGCTAATGTGAATTTTATCATAGGAAGAAATGGAAGTGGTAAAAGTGCTATAATGACAGCATTGGTGGTAGGATTAGGAGGAAAGGCTGCTACAACTAACAGAGGAAGTTCTCTCAAGGGATTCATCAAGGACAAGTGCGGGGATGTCGCTATGGGCCGGCTGCCAGTTAACTCTAGTGGAACAGTGAACAACACAGTATGGGGTAGAGGAAAGGGCCCAGAAAAGCAGGCCCTTCCATTTATTGAAAATAAATCTGCCCATGCAGAACTGGAACATAACAACATAACAGTATCGATCAAGCTACGAAACAGAGGGCAAGATGCATATAAACCCAAAAAATATGGAGAGACCATAACAGTGGAAAGAAGAATTAGCAGTGATGGCAGCGGCTCTTACAAGCTCAAATCACATGATGGCAAAGTGGTTTCTCAGAAAAAGGATGAGCTAAATCACATTCTGGACCAGTTTAATATCCAGGTGGATAACCCAGTATCTGTGTTAAATCAAGACACCAGCAGAAACTTTCTGAACTCTTCAGATCCCAAGGATAAATACAAGTTTTTTCTTAAAGCTACCCAGCTAGAGCAAATGAGTACAGATTATCAGCTGATTATTGAACAGCAGGATATTATCAAAAATACTTTAGACAGGAAACAAGAGACACTTCCAGCCATGCAACATAAGGTGCAGCAACTGGAGGAGAAGTACAAAGACATCGCACAGCTGAAGAACATGAAAGAACAAGTTGAAGACCTCAAGAAGGAACGGGTGTGGGCGGAAGTTATAGAGGCTGAAAAGAAACTTGGTCCTTTAGCAAAAGAAGAAGACAATCAGAAGGCTAAGCTGCCCAGATATGAAGAGAAAGTTACAGGGTGTCAGGAAGAGGTGAGAAAGTTGGAAGAGGAGTGGAAAAAAGTTAACGAAGAGTTAAAAGCTATTACTGAGGAGGGTAGAGAATTGGATGGACAACAGCAAGAAATATGTAATGAATTGAAGCAAAAGAAAAATGTCTACAGAGAAAAACAGTCAAGATTAAGGAAGCTGAAGCAAGAAAAACACACACAAGAGAATGACCAGAGGCAGTTAATGGAGAGAATTCAGGAGATCAGACAAACAGCTATGCGTGACCTTGAGTCTGAGAGACAACAAAGACAAGAAGCCCTCCAGCAAAAAAGAGATGAACTCAAAGCTTGGGAGAGTCAGCTGTCAACCACAAACCATCATCGAGGACAGTTGGAGCAGGCTATTAACAGAGCAAAAGAAAGAACGTACCAGCTAAGAACCGATTTGAATGATGCAAATCACAGAGTGGATGGAGCCCAGAGACAGTTAAGAGATCTTCAAGGCAGTCGTAACAACAAGCTTAAACTGTTTGGCTCTTGGGTGCCTGACCTTCTCCAAAGAGTAGAGCAAGCAGACCGGAGGGGAAGGTTTCATCACAGACCTGTTGGCCCCATTGGTGCACATCTGACCCTGAAAGATGAAAGGTGGGCTTTAGCCGTGGAGTCGTGTATCAAAAAGTTTGGCTGGGCATTCTGTTGCCATGACAATCACGACCAGCAAGTTTTAAAGCAGCTTTTTTCACAAGTTTGCAGAGATAACATTCCAACCATCATTGTCAGCAGGTTTCAGGATCATGTCCATGATGTCTCAGCCAATAAACCAAGATCCGAGTTCCCGACTGTGCTAGACATGCTGTTGATTGACAATCCTGTTGTCACAAACTGTCTTATTGACCAGGTTGCTATTGAGTCAGTCTTACTCATAGAGGATCCCAAAGTAGCCCGTCAAGTTATGTTCCAGAACCCGCCTGCAAAAGCAAGAATGGCTTATGCCATGAATGGAGATCAACTGCTCGGCGGGAAGACAGCTAGATCATATGCATCCATGATGGATAAGGCCAGATACCTGCAGAAAGATATTGAAGTAGAGATCAGACAACTTGAGCAAGAGATTGAGCACAAGAGACAGCATCAACAGCAGTGCCAGAGGGACCTTGATGATGTTGACAGAACAATCAGAGACAATACGACAGAGCTTAAGAAAGCAAAACAGAAAGCGTTTCGTGAACAGGAGGCAGTCAATAAATTCCTTGGTGAAATAACAGAGCTTGAGAATTATGAAGAAGAAGACCTTCCTGATGTTACAACGTTGGAAGAAGAAGTAGAGCACTACACTCAGCAGTTAGAAGACCTGGAACAACAGACTACTGTAGTTGAAGAAGAGGCAGAGAAAGCACAAGATGAACTGAGCAAACAACAGCTTAAGGAAACGCAACACAGGGAGAAGATACAAAGTTTACTGGAAAAGGCTGATCCATTTAGGAATCAGCAACACGAAATTGAAGTACAGATTGAGACTCAAAAGAGCCACAGGAAACACTTTGAAACACGGCTCAGAGAACTGCAGGATTCAATCAGAAAAGCAGAGCGAGAGCATGAAGCCATGAAAAAACTAGTTAGGGTTAAGACCGAGCAAGCAAGCCAGTTTTGTGAACGAGTTGCTACCAGAAGGACTGTGAAAAGCCTCGAGACTGAGATAATCCAAAAGACGAAACGAATACAGACTGAAGAACGAAACAAAGGTAAACACGAGGATATCACAAGAGAGTACTTTGAAGCAAAGAAACGGTACGAAGGTATCATGGAGTCACTGAAGAATCTAAAAAAATACAGCAAGCGTTTAAGGAAAGTAATGGAGGACCGAGCGAAAGCGTTTGTGAATTACCGTCATTTCATCGCTATCCGAGCTAAGTTCTTCTTCCAAATGATGCTTTCTCAGAGAGGTTACAATGGCAAGATGGTGTTCGATCACGGCAGCGAAATTCTGGGGCTTCAGGTAAATGTTGAGCAGGGTATCAAACGGGTTGCCAAGGATACGCGTTCGTTATCTGGAGGAGAGCGATCTTTTTCCACCGTATCCTTCATAATGGCTCTTTGGGAAGCAATGGAGTCGCCCTTCAGATGTCTAGATGAATTCGATGTTTTCATGGACATGGTTAACAGGCGGATTAGCATGGAAATGATGTTAAAGGTCGCCAAAGAACAACAAGAAAGGCAGTTCATTCTTCTCACGCCGCAGGACATGAGTGCCATTGGAAGCAGTCGAAGTGTGAGAATATTTAGACTACGTGATCCTGAGAGAGGGCAGACGACATTAAACTTTCAACCACCCGAAGCATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P9I7	Structural maintenance of chromosomes protein 6 OS=Xenopus laevis OX=8355 GN=smc6 PE=2 SV=1
Q924W5	Structural maintenance of chromosomes protein 6 OS=Mus musculus OX=10090 GN=Smc6 PE=1 SV=1
Q96SB8	Structural maintenance of chromosomes protein 6 OS=Homo sapiens OX=9606 GN=SMC6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001806 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02463 all species →	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003395 all species →	Domain	RecF/RecN/SMC, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19306 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22804	SMC6; structural maintenance of chromosomes protein 6	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.