Detailed information of evm.model.Ap6.2533 in Astrangia poculata

Genomic Location: Ap6:25320534...25323932
NR annotation: XP_020620082.1, vacuolar protein sorting-associated protein 13C-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9BGZ0Intermembrane lipid transfer protein VPS13A OS=Macaca fascicularis OX=9541 GN=VPS13A PE=2 SV=2
Q96RL7Intermembrane lipid transfer protein VPS13A OS=Homo sapiens OX=9606 GN=VPS13A PE=1 SV=2
Q5H8C4Intermembrane lipid transfer protein VPS13A OS=Mus musculus OX=10090 GN=Vps13a PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000005 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF16908
all species →		VPS13_ext_choreinVacuolar sorting-associated protein 13, extended-choreinRepeatInterproscan
PF12624
all species →		Chorein_NVPS13-like, N-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR031646
all species →		DomainVacuolar protein sorting-associated protein 13, extended choreinInterproscan
IPR026854
all species →		DomainVacuolar protein sorting-associated protein 13-like, N-terminal domainInterproscan
IPR026847
all species →		FamilyVacuolar protein sorting-associated protein 13Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16166
all species →		VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006623
all species →		Biological Processprotein targeting to vacuoleInterproscan
GO:0019898
all species →		Cellular Componentextrinsic component of membraneInterproscan
GO:0045053
all species →		Biological Processprotein retention in Golgi apparatusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap6.2533.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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