Gene detail

Detailed information of evm.model.Ap6.2540 in Astrangia poculata

Genomic Location: Ap6:25407345...25417581
NR annotation: XP_020605596.1, LOW QUALITY PROTEIN: androglobin-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.2540

atggcacctagtgtagttggatcactgaatgaaaaagatgagaaaagtaagaaggctaagcaaccaatagtgatttggcctgaatggactgaacaggacattgcccaggaaaaatgggacacagcacacaaagcaaaagaaaaagaaaagggaaaaagcccaaatccacacccttatgaagatcctgaaggaaggacagatttaccagcttccataaaatgcaatgtggatcactggaagaggcctgtcgagtttatactagaaaagtcaccagttgttgtagacccaaagagcctgacagagggaatagacttgctgtctgtaaatgatcatttgacaaacagtgagttacttcgttggatcattggtcaggtgacatgcctatggaagcaacatttcaaggtggaaccagtagagactgtcaaaggcacaaaagacatgaaggagagcaacaaaggagacaaagagaaggacaaggaaaaggataaagaccgagagaaggacaaggacgcattgttagaagacaacacttggaaaccttggggtcacatctggccaaaagagaagacaaaaggaagtcctctgcctgtctacaaccctggtggaaaatactgtgttaggttattctggatgggtacttggcggaaagtgacagttgatgactggatgccatttgatgaggacggcaaacttctcttaccagccacgcctaatgaacatgaactttggcctatgttactctctaaagcacttataaaagttgcttcattagattatgctggtggttataatgcaagtgagattggtgactttacagtggttcatgctttgacgggatggttgccggaaattatccctctaaggtgcggcaatactgttgaaatctggaaacttcttctccaagccttgccacgttggaaattagagaacacaccgccaccagaagagaagaaacagccaaatatggagggaaagaataaaaaagatgacaaggacaaggagagaaaatctaccaagtctgacaaaggacaagagaaagctgacagagacaacaagaacaaagataaagataaagacaaaggcacaccagctgctaatcccgtggaagtccccaaggagccggaatttgttatctttgccagctactgccatcctccaaatacaccaatgagacattctgttcttaaagaaatggctgatgcatctgaaaaactgaggcagtctggtctgtcccataaccacccccacactgtcatgttaacaacagcaagggactgccccctggttcctcccccgccccctgtgcagatccctcggtggaagcttattcggcagaagaagaagaagcagccggtagagcctgcactgactcctcctgagccaccaaaggagccccagttcttggaaattgtgtctccttttcttaaccacaaagtcagccccatccctgtcagcagagcaagaacccctgtcaggtggctgaaattccgtcctgagaagccaatgggtgaaatactggaagaaggtgacaaaggtgatgaagaaaagaaggagggtggggagggagaggaaggaacagaaaagccagctactgagaagaaagaagggggtactgaagaaactgcagccattaaagaggatgacaaacccaagaccccaactccaaggctggaaggtgaagagaccaaaccagaccatgacaaagaaagagaacaacttaaggaaagcaaagatagtcgtgaaagccttaaggaacgaccaactaccaaggattctctgaaggcaaaagagagagaaaagtcagcaaaaagtgagagaggagaaaaagataagttacccaaatctgccgacaataagagtagatcaggaagcaagctgagtgtgattgataaacctgaacgaaacaagtctggtgggctgtcaccaaaagggagaagaatgtctaggatggaaaaacctggagacttggccctaaaaactcctccagagtcaagacgaatgtcaagggtagacaaaggagtgaaagttgaaatagaaagagaatcattgcacaaagttgacattattcgtgaagatgaatgccctgtgcttgatcttcccacttgtgctgttaatgagggagacaagactccgggtgaggctacagatggagaaacgacagaagagaagactgaaggagataagactgaagaaggcgacaaggctaaagaagatagcaacaaagagaagaaaatctggatggagtatgctgacttctgcaaatgctttagacatttgtatatattccacaaacctaacacatacaattattccaagggaaactctgagttaaagtcctcccctgtccttgatatcctcagctttcaaaagatccaagagatcagactgtggcagtga

Transcript

evm.model.Ap6.2540

TTGCTTCATCCTGGCAACACTAGAACACGAAGGCAATCAATGGCACCTAGTGTAGTTGGATCACTGAATGAAAAAGATGAGAAAAGTAAGAAGGCTAAGCAACCAATAGTGATTTGGCCTGAATGGACTGAACAGGACATTGCCCAGGAAAAATGGGACACAGCACACAAAGCAAAAGAAAAAGAAAAGGGAAAAAGCCCAAATCCACACCCTTATGAAGATCCTGAAGGAAGGACAGATTTACCAGCTTCCATAAAATGCAATGTGGATCACTGGAAGAGGCCTGTCGAGTTTATACTAGAAAAGTCACCAGTTGTTGTAGACCCAAAGAGCCTGACAGAGGGAATAGACTTGCTGTCTGTAAATGATCATTTGACAAACAGTGAGTTACTTCGTTGGATCATTGGTCAGGTGACATGCCTATGGAAGCAACATTTCAAGGTGGAACCAGTAGAGACTGTCAAAGGCACAAAAGACATGAAGGAGAGCAACAAAGGAGACAAAGAGAAGGACAAGGAAAAGGATAAAGACCGAGAGAAGGACAAGGACGCATTGTTAGAAGACAACACTTGGAAACCTTGGGGTCACATCTGGCCAAAAGAGAAGACAAAAGGAAGTCCTCTGCCTGTCTACAACCCTGGTGGAAAATACTGTGTTAGGTTATTCTGGATGGGTACTTGGCGGAAAGTGACAGTTGATGACTGGATGCCATTTGATGAGGACGGCAAACTTCTCTTACCAGCCACGCCTAATGAACATGAACTTTGGCCTATGTTACTCTCTAAAGCACTTATAAAAGTTGCTTCATTAGATTATGCTGGTGGTTATAATGCAAGTGAGATTGGTGACTTTACAGTGGTTCATGCTTTGACGGGATGGTTGCCGGAAATTATCCCTCTAAGGTGCGGCAATACTGTTGAAATCTGGAAACTTCTTCTCCAAGCCTTGCCACGTTGGAAATTAGAGAACACACCGCCACCAGAAGAGAAGAAACAGCCAAATATGGAGGGAAAGAATAAAAAAGATGACAAGGACAAGGAGAGAAAATCTACCAAGTCTGACAAAGGACAAGAGAAAGCTGACAGAGACAACAAGAACAAAGATAAAGATAAAGACAAAGGCACACCAGCTGCTAATCCCGTGGAAGTCCCCAAGGAGCCGGAATTTGTTATCTTTGCCAGCTACTGCCATCCTCCAAATACACCAATGAGACATTCTGTTCTTAAAGAAATGGCTGATGCATCTGAAAAACTGAGGCAGTCTGGTCTGTCCCATAACCACCCCCACACTGTCATGTTAACAACAGCAAGGGACTGCCCCCTGGTTCCTCCCCCGCCCCCTGTGCAGATCCCTCGGTGGAAGCTTATTCGGCAGAAGAAGAAGAAGCAGCCGGTAGAGCCTGCACTGACTCCTCCTGAGCCACCAAAGGAGCCCCAGTTCTTGGAAATTGTGTCTCCTTTTCTTAACCACAAAGTCAGCCCCATCCCTGTCAGCAGAGCAAGAACCCCTGTCAGGTGGCTGAAATTCCGTCCTGAGAAGCCAATGGGTGAAATACTGGAAGAAGGTGACAAAGGTGATGAAGAAAAGAAGGAGGGTGGGGAGGGAGAGGAAGGAACAGAAAAGCCAGCTACTGAGAAGAAAGAAGGGGGTACTGAAGAAACTGCAGCCATTAAAGAGGATGACAAACCCAAGACCCCAACTCCAAGGCTGGAAGGTGAAGAGACCAAACCAGACCATGACAAAGAAAGAGAACAACTTAAGGAAAGCAAAGATAGTCGTGAAAGCCTTAAGGAACGACCAACTACCAAGGATTCTCTGAAGGCAAAAGAGAGAGAAAAGTCAGCAAAAAGTGAGAGAGGAGAAAAAGATAAGTTACCCAAATCTGCCGACAATAAGAGTAGATCAGGAAGCAAGCTGAGTGTGATTGATAAACCTGAACGAAACAAGTCTGGTGGGCTGTCACCAAAAGGGAGAAGAATGTCTAGGATGGAAAAACCTGGAGACTTGGCCCTAAAAACTCCTCCAGAGTCAAGACGAATGTCAAGGGTAGACAAAGGAGTGAAAGTTGAAATAGAAAGAGAATCATTGCACAAAGTTGACATTATTCGTGAAGATGAATGCCCTGTGCTTGATCTTCCCACTTGTGCTGTTAATGAGGGAGACAAGACTCCGGGTGAGGCTACAGATGGAGAAACGACAGAAGAGAAGACTGAAGGAGATAAGACTGAAGAAGGCGACAAGGCTAAAGAAGATAGCAACAAAGAGAAGAAAATCTGGATGGAGTATGCTGACTTCTGCAAATGCTTTAGACATTTGTATATATTCCACAAACCTAACACATACAATTATTCCAAGGGAAACTCTGAGTTAAAGTCCTCCCCTGTCCTTGATATCCTCAGCTTTCAAAAGATCCAAGAGATCAGACTGTGGCAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N7X0	Androglobin OS=Homo sapiens OX=9606 GN=ADGB PE=1 SV=3
G3UZ78	Androglobin OS=Mus musculus OX=10090 GN=Adgb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002574 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00648 all species →	Peptidase_C2	Calpain family cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR053033 all species →	Family	Androglobin-like	Interproscan
IPR001300 all species →	Domain	Peptidase C2, calpain, catalytic domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46298 all species →	ANDROGLOBIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004198 all species →	Molecular Function	calcium-dependent cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.2540.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.