Genomic Location: Ap6:25852193...25867502
NR annotation: XP_020605597.1, peptidyl-prolyl cis-trans isomerase-like 4 isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.2582 |
| Transcript |
| evm.model.Ap6.2582 |
| Protein |
| evm.model.Ap6.2582 |
| UniProt accession | Description |
|---|---|
| Q9CXG3 | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus OX=10090 GN=Ppil4 PE=1 SV=2 |
| Q8WUA2 | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens OX=9606 GN=PPIL4 PE=1 SV=1 |
| G5EEW6 | Peptidyl-prolyl cis-trans isomerase sig-7 OS=Caenorhabditis elegans OX=6239 GN=sig-7 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004998 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 all species → | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF00160 all species → | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029000 all species → | Homologous_superfamily | Cyclophilin-like domain superfamily | Interproscan |
| IPR002130 all species → | Domain | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain | Interproscan |
| IPR035542 all species → | Family | Cyclophilin-RNA interacting protein | Interproscan |
| IPR035538 all species → | Domain | PPIL4-like, cyclophilin domain | Interproscan |
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR000504 all species → | Domain | RNA recognition motif domain | Interproscan |
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45843 all species → | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000413 all species → | Biological Process | protein peptidyl-prolyl isomerization | Interproscan |
| GO:0003755 all species → | Molecular Function | peptidyl-prolyl cis-trans isomerase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
evm.model.Ap6.2582.Transcript abundance of evm.model.Ap6.2582 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
