Genomic Location: Ap6:26451641...26454359
NR annotation: XP_027056265.1, superoxide dismutase [Cu-Zn]-like isoform X2 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.2629 |
| Transcript |
| evm.model.Ap6.2629 |
| Protein |
| evm.model.Ap6.2629 |
| UniProt accession | Description |
|---|---|
| P00443 | Superoxide dismutase [Cu-Zn] OS=Equus caballus OX=9796 GN=SOD1 PE=1 SV=2 |
| Q5FB29 | Superoxide dismutase [Cu-Zn] OS=Capra hircus OX=9925 GN=SOD1 PE=2 SV=3 |
| Q52RN5 | Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens OX=30521 GN=SOD1 PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000995 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00080 all species → | Sod_Cu | Copper/zinc superoxide dismutase (SODC) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001424 all species → | Domain | Superoxide dismutase, copper/zinc binding domain | Interproscan |
| IPR036423 all species → | Homologous_superfamily | Superoxide dismutase-like, copper/zinc binding domain superfamily | Interproscan |
| IPR024134 all species → | Family | Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10003 all species → | SUPEROXIDE DISMUTASE CU-ZN -RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006801 all species → | Biological Process | superoxide metabolic process | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0005507 all species → | Molecular Function | copper ion binding | Interproscan |
evm.model.Ap6.2629.Transcript abundance of evm.model.Ap6.2629 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
