Genomic Location: Ap6:27180786...27203716
NR annotation: XP_020620163.1, cullin-5-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.2707 |
| Transcript |
| evm.model.Ap6.2707 |
| Protein |
| evm.model.Ap6.2707 |
| UniProt accession | Description |
|---|---|
| Q93034 | Cullin-5 OS=Homo sapiens OX=9606 GN=CUL5 PE=1 SV=4 |
| Q5RB36 | Cullin-5 OS=Pongo abelii OX=9601 GN=CUL5 PE=2 SV=3 |
| Q9JJ31 | Cullin-5 OS=Rattus norvegicus OX=10116 GN=Cul5 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000554 (this species only) |
| Ubiquitin family | E3|E3 adaptor Cullin RING|Cullin · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10557 all species → | Cullin_Nedd8 | Cullin protein neddylation domain | Domain | Interproscan |
| PF00888 all species → | Cullin | Cullin family | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016158 all species → | Domain | Cullin homology domain | Interproscan |
| IPR016159 all species → | Homologous_superfamily | Cullin repeat-like-containing domain superfamily | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR019559 all species → | Domain | Cullin protein, neddylation domain | Interproscan |
| IPR036317 all species → | Homologous_superfamily | Cullin homology domain superfamily | Interproscan |
| IPR045093 all species → | Family | Cullin | Interproscan |
| IPR001373 all species → | Domain | Cullin, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11932 all species → | CULLIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| GO:0019005 all species → | Cellular Component | SCF ubiquitin ligase complex | Interproscan |
| GO:0030674 all species → | Molecular Function | protein-macromolecule adaptor activity | Interproscan |
| GO:0031146 all species → | Biological Process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0031461 all species → | Cellular Component | cullin-RING ubiquitin ligase complex | Interproscan |
| GO:0031466 all species → | Cellular Component | Cul5-RING ubiquitin ligase complex | Interproscan |
| GO:0031625 all species → | Molecular Function | ubiquitin protein ligase binding | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10612 | CUL5; cullin 5 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Transcript abundance of evm.model.Ap6.2707 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
