Gene detail

Detailed information of evm.model.Ap6.2713 in Astrangia poculata

Genomic Location: Ap6:27266740...27271272
NR annotation: XP_020620085.1, serine/threonine-protein kinase LATS1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.2713

atgaaacatacacaaacttcaactaaaatggcggaacgggaaggagaaccggccgctaggcgaatagcgtatgttggcaatagtcagctcatgcttcgagacataaagcaaagtttgaggcatctgagtaggcaacctgagcaaagacaagaagcaactagaatttcacaacaatcggccacttcagggtcgaatgtggcgaccgttgcagaaacggcgtcgcaatcaaacgtatctcgatccatgggacaaaatccaaatcgccggataagtactgcgagagctttggccgagatcaggagcagtttaaaacctttcgagaccacagagtccgggtattcctcttgttcggagagcggagagtccatcaacaaacactttttgagtcaactcaaggctatggggttggacgaggagtcggcgacggaggccatgagattgactgctaacaggcctatggaggagtcattagaacttattgctcagttggcaacaacacacggctacaacagagtaaatttcggttcaaatacatcaagcaatagtcgtaccccgctccctcctccttataatgcggcagtccatcggatgtcatggaagggctcggaagaatcactgaacagtcctaaacgagccgagtctcccatgagtctcccagttgcaagtgcacaggcaagtgttggagcacctacagcagagcatacaagggctgaatggcgcgtccaaaggtcaaataaccctggactagctgcccctcaaccttggcaaggagctcgcatgccagcgcctcctcagcaaagatttgtggagcgacctgcttcaaatatgcagcttggttggaagcctgtggctgcacccagtgcaaaaccggtgcaaagcatcaatcaaaatcaaacacaatttgttaacaatgttggtggaaatccaccacctcctcagtttcatgttacggcaaatcttacattaactggaaacaattccactgctgagaactttcaagggggaagaatggcagcaacaccagcaagtggggcaaatgccatgtcctttaacatactcgttcagacaaactttccacctaattcttctggaagtgttaaaccgtcaaatcagggacaattttatcaagcttcacctcaacacccaagtgttgtccagggcgcacacagtgacatgttatgtcactctcctgtgccaagtgcttcgcaggctccagtgccgcactttgtccagtcatttgacccgactctccatccaccacctgcgtatgctcccgtagcaagaaggccactggggtgttcggatgttagcatgtcagagaacaccaactggttgaatcatattcctcgtgcttcgtcgcgatcaccagtacctcctcctccagaacactggaggcactcctggaacacagaaacatcgtcaaactcaggatcaatcagcgatgaaatgccatggtctagttcacataatgacagtggacccccatcacctttgtcggactcatcatttactattgagggtccaacaaaggtgacaaatacaactggaacagttgtttatcgtcttgactctcctaattcacgtaaaagacctccaattccaaacatggatgctcaggagaacagaatcacatcaactgaggatgatgaccaaatgtcggagtcggatatggaaacgcttactcctggagaacgatatcggcaattcaaagagaaaaactctaaactaaagaaatgtccgcctgcagcagcaaaattttacttagaacagcactttgaaaatttaatgaagggcacagaggaaagacataagagacgtgtacagttagaagaagaaatgcaaaaggttggactttctcaagatgcaaggaatcaaatgcgacaaatcttagtacagaaagagaccaaccacattcgcttaaagcgatcaaaaatggatataacaatgtttgaaaaaataaacaaaatcgggactggtgcattcggagaagtctggcttgtccgaaaaatagacacaaacgtgttgtatgccatgaaaatcctacggaagactgaggttttgaaacgaaaccaggtagctcatgttaaagctgaaagggacattcttgcggaggcagacaatgaatgggttgtcaagttgtactattcttttcaagatgacaaattcttgtattttgtgatggactacattccaggtggagacttgatgagtcttttgattaaaattgaaatcttccctgaggatctggcaagattctacattgcggaactggtgctagcaattgagtcggtacaccgaatgggatttgtccaccgtgacatcaaaccggacaatgtgttgattgacaaggacggtcacattaagctgacagactttgggctttgcactggtttccgttggacccatgacagcaagtattatgagaaagacggtcatgagcaccagccgagcatggagtatggcatgctcccatgggatcttccttctgaatggaatgagcaactgatacagaggtcgcttttggaaatgaagccattggaaaagcgtcacttccgaaagcacatgagaagtcttgcgcattccttggtgggaacacccaactacattgcaccagaggtgttgcaaaggagtggctacactcacctatgtgattggtggtctgttggagtaatcatgtatgagatgcttgttgggcaccccccgtttcttgcctcgactcctgcggacactcaactgaaggtcatcaattgggaaacaacattgcacattcccaagcaagcccaactgagtcgggaggccagggacttaatcttgaggctgtgcacgagcccagacaaaaggcttggggccaatggaattgaagaaataaaaaaccatcccttctttgccaatgtggactggggttatggtgtgcgccgcatgcaagcaccatatcgaccacagatctcttccccaactgacacgtcaaactttgacccagtcgatgaatcagaaaggatgagtagtgatgaggaagctgcttctgtcgagagtgaggcagcaccgcccaaacagggccgacatcctgagcatgcattctatgagttcacatttagaaggtttttcaatgatgatggtggaaacacttatgttgctcgaagatattcatctgacgacagcggcagtgacactagcaaggaaccagtgtatgtttaa

Transcript

evm.model.Ap6.2713

ATGAAACATACACAAACTTCAACTAAAATGGCGGAACGGGAAGGAGAACCGGCCGCTAGGCGAATAGCGTATGTTGGCAATAGTCAGCTCATGCTTCGAGACATAAAGCAAAGTTTGAGGCATCTGAGTAGGCAACCTGAGCAAAGACAAGAAGCAACTAGAATTTCACAACAATCGGCCACTTCAGGGTCGAATGTGGCGACCGTTGCAGAAACGGCGTCGCAATCAAACGTATCTCGATCCATGGGACAAAATCCAAATCGCCGGATAAGTACTGCGAGAGCTTTGGCCGAGATCAGGAGCAGTTTAAAACCTTTCGAGACCACAGAGTCCGGGTATTCCTCTTGTTCGGAGAGCGGAGAGTCCATCAACAAACACTTTTTGAGTCAACTCAAGGCTATGGGGTTGGACGAGGAGTCGGCGACGGAGGCCATGAGATTGACTGCTAACAGGCCTATGGAGGAGTCATTAGAACTTATTGCTCAGTTGGCAACAACACACGGCTACAACAGAGTAAATTTCGGTTCAAATACATCAAGCAATAGTCGTACCCCGCTCCCTCCTCCTTATAATGCGGCAGTCCATCGGATGTCATGGAAGGGCTCGGAAGAATCACTGAACAGTCCTAAACGAGCCGAGTCTCCCATGAGTCTCCCAGTTGCAAGTGCACAGGCAAGTGTTGGAGCACCTACAGCAGAGCATACAAGGGCTGAATGGCGCGTCCAAAGGTCAAATAACCCTGGACTAGCTGCCCCTCAACCTTGGCAAGGAGCTCGCATGCCAGCGCCTCCTCAGCAAAGATTTGTGGAGCGACCTGCTTCAAATATGCAGCTTGGTTGGAAGCCTGTGGCTGCACCCAGTGCAAAACCGGTGCAAAGCATCAATCAAAATCAAACACAATTTGTTAACAATGTTGGTGGAAATCCACCACCTCCTCAGTTTCATGTTACGGCAAATCTTACATTAACTGGAAACAATTCCACTGCTGAGAACTTTCAAGGGGGAAGAATGGCAGCAACACCAGCAAGTGGGGCAAATGCCATGTCCTTTAACATACTCGTTCAGACAAACTTTCCACCTAATTCTTCTGGAAGTGTTAAACCGTCAAATCAGGGACAATTTTATCAAGCTTCACCTCAACACCCAAGTGTTGTCCAGGGCGCACACAGTGACATGTTATGTCACTCTCCTGTGCCAAGTGCTTCGCAGGCTCCAGTGCCGCACTTTGTCCAGTCATTTGACCCGACTCTCCATCCACCACCTGCGTATGCTCCCGTAGCAAGAAGGCCACTGGGGTGTTCGGATGTTAGCATGTCAGAGAACACCAACTGGTTGAATCATATTCCTCGTGCTTCGTCGCGATCACCAGTACCTCCTCCTCCAGAACACTGGAGGCACTCCTGGAACACAGAAACATCGTCAAACTCAGGATCAATCAGCGATGAAATGCCATGGTCTAGTTCACATAATGACAGTGGACCCCCATCACCTTTGTCGGACTCATCATTTACTATTGAGGGTCCAACAAAGGTGACAAATACAACTGGAACAGTTGTTTATCGTCTTGACTCTCCTAATTCACGTAAAAGACCTCCAATTCCAAACATGGATGCTCAGGAGAACAGAATCACATCAACTGAGGATGATGACCAAATGTCGGAGTCGGATATGGAAACGCTTACTCCTGGAGAACGATATCGGCAATTCAAAGAGAAAAACTCTAAACTAAAGAAATGTCCGCCTGCAGCAGCAAAATTTTACTTAGAACAGCACTTTGAAAATTTAATGAAGGGCACAGAGGAAAGACATAAGAGACGTGTACAGTTAGAAGAAGAAATGCAAAAGGTTGGACTTTCTCAAGATGCAAGGAATCAAATGCGACAAATCTTAGTACAGAAAGAGACCAACCACATTCGCTTAAAGCGATCAAAAATGGATATAACAATGTTTGAAAAAATAAACAAAATCGGGACTGGTGCATTCGGAGAAGTCTGGCTTGTCCGAAAAATAGACACAAACGTGTTGTATGCCATGAAAATCCTACGGAAGACTGAGGTTTTGAAACGAAACCAGGTAGCTCATGTTAAAGCTGAAAGGGACATTCTTGCGGAGGCAGACAATGAATGGGTTGTCAAGTTGTACTATTCTTTTCAAGATGACAAATTCTTGTATTTTGTGATGGACTACATTCCAGGTGGAGACTTGATGAGTCTTTTGATTAAAATTGAAATCTTCCCTGAGGATCTGGCAAGATTCTACATTGCGGAACTGGTGCTAGCAATTGAGTCGGTACACCGAATGGGATTTGTCCACCGTGACATCAAACCGGACAATGTGTTGATTGACAAGGACGGTCACATTAAGCTGACAGACTTTGGGCTTTGCACTGGTTTCCGTTGGACCCATGACAGCAAGTATTATGAGAAAGACGGTCATGAGCACCAGCCGAGCATGGAGTATGGCATGCTCCCATGGGATCTTCCTTCTGAATGGAATGAGCAACTGATACAGAGGTCGCTTTTGGAAATGAAGCCATTGGAAAAGCGTCACTTCCGAAAGCACATGAGAAGTCTTGCGCATTCCTTGGTGGGAACACCCAACTACATTGCACCAGAGGTGTTGCAAAGGAGTGGCTACACTCACCTATGTGATTGGTGGTCTGTTGGAGTAATCATGTATGAGATGCTTGTTGGGCACCCCCCGTTTCTTGCCTCGACTCCTGCGGACACTCAACTGAAGGTCATCAATTGGGAAACAACATTGCACATTCCCAAGCAAGCCCAACTGAGTCGGGAGGCCAGGGACTTAATCTTGAGGCTGTGCACGAGCCCAGACAAAAGGCTTGGGGCCAATGGAATTGAAGAAATAAAAAACCATCCCTTCTTTGCCAATGTGGACTGGGGTTATGGTGTGCGCCGCATGCAAGCACCATATCGACCACAGATCTCTTCCCCAACTGACACGTCAAACTTTGACCCAGTCGATGAATCAGAAAGGATGAGTAGTGATGAGGAAGCTGCTTCTGTCGAGAGTGAGGCAGCACCGCCCAAACAGGGCCGACATCCTGAGCATGCATTCTATGAGTTCACATTTAGAAGGTTTTTCAATGATGATGGTGGAAACACTTATGTTGCTCGAAGATATTCATCTGACGACAGCGGCAGTGACACTAGCAAGGAACCAGTGTATGTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95835	Serine/threonine-protein kinase LATS1 OS=Homo sapiens OX=9606 GN=LATS1 PE=1 SV=1
Q8BYR2	Serine/threonine-protein kinase LATS1 OS=Mus musculus OX=10090 GN=Lats1 PE=1 SV=3
Q9NRM7	Serine/threonine-protein kinase LATS2 OS=Homo sapiens OX=9606 GN=LATS2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001947 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00433 all species →	Pkinase_C	Protein kinase C terminal domain	Family	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR050236 all species →	Family	Serine/threonine-protein kinases, AGC	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR000961 all species →	Domain	AGC-kinase, C-terminal	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR017892 all species →	Domain	Protein kinase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24356 all species →	SERINE/THREONINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000082 all species →	Biological Process	G1/S transition of mitotic cell cycle	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0035329 all species →	Biological Process	hippo signaling	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0043065 all species →	Biological Process	positive regulation of apoptotic process	Interproscan
GO:0046620 all species →	Biological Process	regulation of organ growth	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08791	LATS1_2, Wts; serine/threonine-protein kinase LATS1/2	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.