Gene detail

Detailed information of evm.model.Ap6.2746 in Astrangia poculata

Genomic Location: Ap6:27715045...27720361
NR annotation: XP_020620081.1, protein kinase C and casein kinase substrate in neurons protein 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O13154	Protein kinase C and casein kinase substrate in neurons protein 2 OS=Gallus gallus OX=9031 GN=PACSIN2 PE=1 SV=1
Q4V920	Protein kinase C and casein kinase substrate in neurons protein 1 OS=Danio rerio OX=7955 GN=pacsin1b PE=1 SV=1
A7MBI0	Protein kinase C and casein kinase substrate in neurons protein 1 OS=Bos taurus OX=9913 GN=PACSIN1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002070 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031160 all species →	Domain	F-BAR domain	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23065 all species →	PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0030100 all species →	Biological Process	regulation of endocytosis	Interproscan
GO:0097320 all species →	Biological Process	plasma membrane tubulation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20123	PACSIN; protein kinase C and casein kinase substrate in neurons protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.