Genomic Location: Ap6:28134128...28163025
NR annotation: XP_020620092.1, cell division cycle 5-related protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.2786 |
| Transcript |
| evm.model.Ap6.2786 |
| Protein |
| evm.model.Ap6.2786 |
| UniProt accession | Description |
|---|---|
| A7SD85 | Cell division cycle 5-related protein OS=Nematostella vectensis OX=45351 GN=cdc5l PE=3 SV=1 |
| Q6A068 | Cell division cycle 5-like protein OS=Mus musculus OX=10090 GN=Cdc5l PE=1 SV=2 |
| Q2KJC1 | Cell division cycle 5-like protein OS=Bos taurus OX=9913 GN=CDC5L PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006746 (this species only) |
| Transcription factor family | MYB · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11831 all species → | Myb_Cef | pre-mRNA splicing factor component | Family | Interproscan |
| PF13921 all species → | Myb_DNA-bind_6 | Myb-like DNA-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR047240 all species → | Domain | Pre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domain | Interproscan |
| IPR017930 all species → | Domain | Myb domain | Interproscan |
| IPR001005 all species → | Domain | SANT/Myb domain | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR047242 all species → | Family | Pre-mRNA splicing factor component CDC5L/Cef1 | Interproscan |
| IPR021786 all species → | Domain | Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45885 all species → | CELL DIVISION CYCLE 5-LIKE PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000398 all species → | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0000974 all species → | Cellular Component | Prp19 complex | Interproscan |
| GO:0000977 all species → | Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0005681 all species → | Cellular Component | spliceosomal complex | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12860 | CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Transcript abundance of evm.model.Ap6.2786 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
