Gene detail

Detailed information of evm.model.Ap6.2811 in Astrangia poculata

Genomic Location: Ap6:28571625...28582847
NR annotation: XP_020601254.1, lebercilin-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.2811

atgactctagaatttgaaaatcctccgttattgtctaacatcggtttgaattcgtcctacgataatgagacagatttcacggcgttggaccgactgacatcgaagaaaacttcagtaatttctgtgacaaggaaggaaagcctgcttgccagggaaaaactacagaaaaatcgtgaaatgtccggcagatactctgacgactacgacagctatgatgatgatttcgacagcccgagcccctcgaaagaacccagtactcgaagattttccccgagacgtgaatctcgaacgtcagagcgagttcgatcgacatcgagatccccgacagaatcgccaccaaaacaccgatctcgttccaagaaggcctcttcaaggcgagattcgtttgcttcgtacagaagtgcttacgggacaaccagaggtcctgcaaaacataaaaccaagaaaagtcaatcagccagttcaaagatgacaaccaaaacctctggtggtgagagctccatgatgagacgcattttatcagcaaacagaaacaaagtttcacgtatgcacaacattttggaagaactgcaacaagaagttgaagaactaaaggatgagaacaagtctttgaaaagagtgagccatcgacaagagaaacaaattaagaaaattgaccatgaggaggcaagcttgccaatgttgctccaaagacacagtgctgaaatgcgcactctaaaagaaaggctacgaagaaatcaagaggttttgcacaagaaagaaaaggaatcgcgagaccgggatggtgagattcagaaattgcgggacaaaatttcaagctatcgtcagctagcagaggacaaaaaactggaagaacgagcttcattagcgaaaaagttagagaaccttgaaaacgaaatggctgcaaaggacaaaaagataacagatctagaaaaatccatcacgctcaaggacaaagcgagacaacgagaaatgaaagagcagaaggatcgctatagacaagcaaaagaggagctaaaaagagtacaggaggatttcagatcgcttcgtgaccgactcaaggataaagaaaaagaattggacgagaagaatatttaccattatcatatcaccaagcagaagaagaaaggcacaactttaccagctctcccagcaggcagtggagcagcccatgcacccgccatcacagctccagcagttcacattgaaaaggttccagacgcaaaagagaagagaacgaacgtgttcctcacaaatgcagcgagtgattctggctcggtgttaacggacgaagggaaagatgaaggagagaaacccgaaacatctggcgttcggcaggaacagtccgctgtgtccgagtcggtgagacatgataggagggatgaagaagacaggctgagaagggaggcagaagagcggaggagacacgaggaagaggagcggagacggcgcattgagaaagaggaagaaagaaaacggaaagaagaggaggaggagggacgaaggagagcggaagagcacgaaagaagaaagcgcgaagaggaagaactgttaaagaaacaacgggaagaacaagaacgcttgaggaagcaaagagaagaagaagaggagaaaaaacgacttaaagaagacgcagagatccggcgcaagaaggatttgttgttggctcgcatgcgcgcaattgatggaagtagcgagccgccgaacggtgttataaaaacaggaggagccgtagctcctcctgccgaagacaaaccgaaaaagcttccgatttttttgcagagtgataaagcaataaaaaccgagccccagcaacccaaaccttcggcgaatgcgggacattctgacgacgatatcttctctgatgcgagtggcggcagaaagaagctaagcgcgagctcgaaacagagccgtaactcgtacgattttaaacagactgtggagaatcttcatcatgggctccctgcacacgcgtcacaggagctcgcacaaaacgatccccctaaaccagacactaaagactctctgtctgacgatctaagttttgggtcttataaacctacgcttggcaggagagctgccgctaaaaaagaaaacaaggataaggacgatttggctttcggaggttataatccttcgtttggtgctaaaaaggaaacaacacgcaaaaacagtggtcttgatttcggcgcagggaagaaaacttcctcagaaaaagagcaaaatagcgtgaacttcggggactacaacccttcatttggggctgcgtcgagcaagactgcttcaagtcaaccaaacggggatatcggtggaaggacaagcccctcacgaggtcgcagagccagaggttttgctggcaacggcgcccccttatttggagatgatcttttcacgaacgaggaggtcaaaccaacaggaaaccccctgtttgggaacaattctatcaataaagacaaatctgcttacccgtgggaaaacaaagtgaacgtaacaggaagatccagcctaacacaacctcaagatgattccttgctgcctcgaagaaaacgcctgcaaagcattggaaaaagcgcagagcaaaatgtccgcgcagtagacaatgcgttagatgacgttgatgacgagatcgaggaagttattctataa

Transcript

evm.model.Ap6.2811

ATGACTCTAGAATTTGAAAATCCTCCGTTATTGTCTAACATCGGTTTGAATTCGTCCTACGATAATGAGACAGATTTCACGGCGTTGGACCGACTGACATCGAAGAAAACTTCAGTAATTTCTGTGACAAGGAAGGAAAGCCTGCTTGCCAGGGAAAAACTACAGAAAAATCGTGAAATGTCCGGCAGATACTCTGACGACTACGACAGCTATGATGATGATTTCGACAGCCCGAGCCCCTCGAAAGAACCCAGTACTCGAAGATTTTCCCCGAGACGTGAATCTCGAACGTCAGAGCGAGTTCGATCGACATCGAGATCCCCGACAGAATCGCCACCAAAACACCGATCTCGTTCCAAGAAGGCCTCTTCAAGGCGAGATTCGTTTGCTTCGTACAGAAGTGCTTACGGGACAACCAGAGGTCCTGCAAAACATAAAACCAAGAAAAGTCAATCAGCCAGTTCAAAGATGACAACCAAAACCTCTGGTGGTGAGAGCTCCATGATGAGACGCATTTTATCAGCAAACAGAAACAAAGTTTCACGTATGCACAACATTTTGGAAGAACTGCAACAAGAAGTTGAAGAACTAAAGGATGAGAACAAGTCTTTGAAAAGAGTGAGCCATCGACAAGAGAAACAAATTAAGAAAATTGACCATGAGGAGGCAAGCTTGCCAATGTTGCTCCAAAGACACAGTGCTGAAATGCGCACTCTAAAAGAAAGGCTACGAAGAAATCAAGAGGTTTTGCACAAGAAAGAAAAGGAATCGCGAGACCGGGATGGTGAGATTCAGAAATTGCGGGACAAAATTTCAAGCTATCGTCAGCTAGCAGAGGACAAAAAACTGGAAGAACGAGCTTCATTAGCGAAAAAGTTAGAGAACCTTGAAAACGAAATGGCTGCAAAGGACAAAAAGATAACAGATCTAGAAAAATCCATCACGCTCAAGGACAAAGCGAGACAACGAGAAATGAAAGAGCAGAAGGATCGCTATAGACAAGCAAAAGAGGAGCTAAAAAGAGTACAGGAGGATTTCAGATCGCTTCGTGACCGACTCAAGGATAAAGAAAAAGAATTGGACGAGAAGAATATTTACCATTATCATATCACCAAGCAGAAGAAGAAAGGCACAACTTTACCAGCTCTCCCAGCAGGCAGTGGAGCAGCCCATGCACCCGCCATCACAGCTCCAGCAGTTCACATTGAAAAGGTTCCAGACGCAAAAGAGAAGAGAACGAACGTGTTCCTCACAAATGCAGCGAGTGATTCTGGCTCGGTGTTAACGGACGAAGGGAAAGATGAAGGAGAGAAACCCGAAACATCTGGCGTTCGGCAGGAACAGTCCGCTGTGTCCGAGTCGGTGAGACATGATAGGAGGGATGAAGAAGACAGGCTGAGAAGGGAGGCAGAAGAGCGGAGGAGACACGAGGAAGAGGAGCGGAGACGGCGCATTGAGAAAGAGGAAGAAAGAAAACGGAAAGAAGAGGAGGAGGAGGGACGAAGGAGAGCGGAAGAGCACGAAAGAAGAAAGCGCGAAGAGGAAGAACTGTTAAAGAAACAACGGGAAGAACAAGAACGCTTGAGGAAGCAAAGAGAAGAAGAAGAGGAGAAAAAACGACTTAAAGAAGACGCAGAGATCCGGCGCAAGAAGGATTTGTTGTTGGCTCGCATGCGCGCAATTGATGGAAGTAGCGAGCCGCCGAACGGTGTTATAAAAACAGGAGGAGCCGTAGCTCCTCCTGCCGAAGACAAACCGAAAAAGCTTCCGATTTTTTTGCAGAGTGATAAAGCAATAAAAACCGAGCCCCAGCAACCCAAACCTTCGGCGAATGCGGGACATTCTGACGACGATATCTTCTCTGATGCGAGTGGCGGCAGAAAGAAGCTAAGCGCGAGCTCGAAACAGAGCCGTAACTCGTACGATTTTAAACAGACTGTGGAGAATCTTCATCATGGGCTCCCTGCACACGCGTCACAGGAGCTCGCACAAAACGATCCCCCTAAACCAGACACTAAAGACTCTCTGTCTGACGATCTAAGTTTTGGGTCTTATAAACCTACGCTTGGCAGGAGAGCTGCCGCTAAAAAAGAAAACAAGGATAAGGACGATTTGGCTTTCGGAGGTTATAATCCTTCGTTTGGTGCTAAAAAGGAAACAACACGCAAAAACAGTGGTCTTGATTTCGGCGCAGGGAAGAAAACTTCCTCAGAAAAAGAGCAAAATAGCGTGAACTTCGGGGACTACAACCCTTCATTTGGGGCTGCGTCGAGCAAGACTGCTTCAAGTCAACCAAACGGGGATATCGGTGGAAGGACAAGCCCCTCACGAGGTCGCAGAGCCAGAGGTTTTGCTGGCAACGGCGCCCCCTTATTTGGAGATGATCTTTTCACGAACGAGGAGGTCAAACCAACAGGAAACCCCCTGTTTGGGAACAATTCTATCAATAAAGACAAATCTGCTTACCCGTGGGAAAACAAAGTGAACGTAACAGGAAGATCCAGCCTAACACAACCTCAAGATGATTCCTTGCTGCCTCGAAGAAAACGCCTGCAAAGCATTGGAAAAAGCGCAGAGCAAAATGTCCGCGCAGTAGACAATGCGTTAGATGACGTTGATGACGAGATCGAGGAAGTTATTCTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86VQ0	Lebercilin OS=Homo sapiens OX=9606 GN=LCA5 PE=1 SV=2
Q5U2Y9	Lebercilin OS=Rattus norvegicus OX=10116 GN=Lca5 PE=2 SV=1
Q80ST9	Lebercilin OS=Mus musculus OX=10090 GN=Lca5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003422 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15619 all species →	Lebercilin	Ciliary protein causing Leber congenital amaurosis disease	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026188 all species →	Family	Lebercilin-like	Interproscan
IPR028933 all species →	Domain	Lebercilin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16650 all species →	C21ORF13-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24828	LCA5; lebercilin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.