Gene detail

Detailed information of evm.model.Ap6.2840 in Astrangia poculata

Genomic Location: Ap6:28918226...28926428
NR annotation: XP_020601229.1, dimethyladenosine transferase 1, mitochondrial-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28HM1	Dimethyladenosine transferase 1, mitochondrial OS=Xenopus tropicalis OX=8364 GN=tfb1m PE=2 SV=1
Q7T0W5	Dimethyladenosine transferase 1, mitochondrial OS=Xenopus laevis OX=8355 GN=tfb1m.L PE=2 SV=1
Q8JZM0	Dimethyladenosine transferase 1, mitochondrial OS=Mus musculus OX=10090 GN=Tfb1m PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004425 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00398 all species →	RrnaAD	Ribosomal RNA adenine dimethylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011530 all species →	Family	Ribosomal RNA adenine dimethylase	Interproscan
IPR001737 all species →	Family	Ribosomal RNA adenine methyltransferase KsgA/Erm	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR023165 all species →	Homologous_superfamily	rRNA adenine dimethylase-like, C-terminal	Interproscan
IPR020598 all species →	Domain	Ribosomal RNA adenine methylase transferase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11727 all species →	DIMETHYLADENOSINE TRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000179 all species →	Molecular Function	rRNA (adenine-N6,N6-)-dimethyltransferase activity	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0000154 all species →	Biological Process	rRNA modification	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006391 all species →	Biological Process	transcription initiation at mitochondrial promoter	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan
GO:0034246 all species →	Molecular Function	mitochondrial transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15266	TFB1M; dimethyladenosine transferase 1, mitochondrial	EC:2.1.1.-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.