Gene detail

Detailed information of evm.model.Ap6.2848 in Astrangia poculata

Genomic Location: Ap6:29002012...29004009
NR annotation: KAJ7385703.1, hypothetical protein OS493_013732 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.2848

atgaacgaagagaaggttatgtacaacaaccacagcgatataacaacaagtgaaatgtacaacagcggacaaaacgcagtgcaagctgtagcgtcgggcgcaaagttgaaaggcgattcatccgaaccactgcagtcgggaccaagtttcaaagacaagatgcacagcacaggtatcctttctgtagatggcgaaggggtgaagtcgatagccaatacttacaacagagaaacatcaatgaattgcgcggaatacccattggggatttctgggattatcaaggtcaccccgatgttcaggaaaaagatatcggttgcaatttttaacgagcacagtacactgaatcccaggccaaagttacatgaaaatgtgcagcagaccagcgagagccggccaactaaaaatgagaatccgccaaaacgggccatagacgcatttcatcatagtgggtcaaatgtgcatgtcttccttcgcgaaattacatcaatgcaaagctcagaggaagagagtgtaacgcgtttgaacaatattctcgcgatgtcagcgccatcgaaagacgctcttctacaaatggcacgactatattccgaatgtcttaaagataatatcaaggatgcgagtaacaattttgtggaagacgtatgctgctctgtgaacgaacgttgcagtcaaaaccctcaccgtttggcactttcctttggatacattgaagaagcatctaaggctctgacagacttcgctgatgactccatggggtgggagaagttggtttcttatggtgaggcaagttccactgaaccaaaactcgttttcatctttggtggacagtgcgcagaatggtatgctatggcgagacagctaattgaatacgagcctgttttcagagaagctattttgaccgtatgtaatttacttcaagatctgggtatgacctggtcactcatagacgagctcctggcaccagaggaagtatcgaggatttcggagcattgcgtcgctcaggcatccacttttgctgttcagtacgcgactgcacagttgcttaagttctggaaagtctatccctccgctgtccttggccaaagtctgggagaagttgcagctgcctgtgttgctggaattataacggtcagggaagcagttcagatagtggttattcgctctactctacacgataaatgttccagtaatggccttatggcggccctgggtatgtcagaagaagataccaggacattattggtagacctaaagttaaacaccacacttgacataggcgcagtcaatggtgcaaagatggtgctggtggctggtgaatctcaatcaatagcagctctgggtcagcacctttccatgcacgaagacaaaacgttctggcgcgtttttgaaacaaaacgagcatttcacagctaccatatggaccaagtaaagaaaccttttgaatcagccatgcaacatgtcaacctgaagcctcagatgtcgcagttcccagtatactctacggttgacggtaaagttatctcgggtaaacagtttgacagtcattactggtggcgaaacatacgttgtcaagtcaagttacaggcagcgatcaagcagctgctaaaagatggttacaagcagatgattgaaataagtacccaacctattttagcccgccatgtcaagcagattgcccttcatgaaaaccaagcagttcccattgtcatggcagcacatcctcgcaaaagcgtacctgttaacgaccagcacaagtggtttcttcagaacacagtttgtaaactttacacgctgggattttccatagattggaagtgtgtgccgggctttccatcacccaaatttttccgtatgctccactatccgcggctggatagcagacctcttaaaagtgacaaatgtccaaagaagcaaacacacccatttcgagaggtggaaatgaccggcctgtattcagacatgcactgctgggagactgagattgacctccacttttag

Transcript

evm.model.Ap6.2848

ATGAACGAAGAGAAGGTTATGTACAACAACCACAGCGATATAACAACAAGTGAAATGTACAACAGCGGACAAAACGCAGTGCAAGCTGTAGCGTCGGGCGCAAAGTTGAAAGGCGATTCATCCGAACCACTGCAGTCGGGACCAAGTTTCAAAGACAAGATGCACAGCACAGGTATCCTTTCTGTAGATGGCGAAGGGGTGAAGTCGATAGCCAATACTTACAACAGAGAAACATCAATGAATTGCGCGGAATACCCATTGGGGATTTCTGGGATTATCAAGGTCACCCCGATGTTCAGGAAAAAGATATCGGTTGCAATTTTTAACGAGCACAGTACACTGAATCCCAGGCCAAAGTTACATGAAAATGTGCAGCAGACCAGCGAGAGCCGGCCAACTAAAAATGAGAATCCGCCAAAACGGGCCATAGACGCATTTCATCATAGTGGGTCAAATGTGCATGTCTTCCTTCGCGAAATTACATCAATGCAAAGCTCAGAGGAAGAGAGTGTAACGCGTTTGAACAATATTCTCGCGATGTCAGCGCCATCGAAAGACGCTCTTCTACAAATGGCACGACTATATTCCGAATGTCTTAAAGATAATATCAAGGATGCGAGTAACAATTTTGTGGAAGACGTATGCTGCTCTGTGAACGAACGTTGCAGTCAAAACCCTCACCGTTTGGCACTTTCCTTTGGATACATTGAAGAAGCATCTAAGGCTCTGACAGACTTCGCTGATGACTCCATGGGGTGGGAGAAGTTGGTTTCTTATGGTGAGGCAAGTTCCACTGAACCAAAACTCGTTTTCATCTTTGGTGGACAGTGCGCAGAATGGTATGCTATGGCGAGACAGCTAATTGAATACGAGCCTGTTTTCAGAGAAGCTATTTTGACCGTATGTAATTTACTTCAAGATCTGGGTATGACCTGGTCACTCATAGACGAGCTCCTGGCACCAGAGGAAGTATCGAGGATTTCGGAGCATTGCGTCGCTCAGGCATCCACTTTTGCTGTTCAGTACGCGACTGCACAGTTGCTTAAGTTCTGGAAAGTCTATCCCTCCGCTGTCCTTGGCCAAAGTCTGGGAGAAGTTGCAGCTGCCTGTGTTGCTGGAATTATAACGGTCAGGGAAGCAGTTCAGATAGTGGTTATTCGCTCTACTCTACACGATAAATGTTCCAGTAATGGCCTTATGGCGGCCCTGGGTATGTCAGAAGAAGATACCAGGACATTATTGGTAGACCTAAAGTTAAACACCACACTTGACATAGGCGCAGTCAATGGTGCAAAGATGGTGCTGGTGGCTGGTGAATCTCAATCAATAGCAGCTCTGGGTCAGCACCTTTCCATGCACGAAGACAAAACGTTCTGGCGCGTTTTTGAAACAAAACGAGCATTTCACAGCTACCATATGGACCAAGTAAAGAAACCTTTTGAATCAGCCATGCAACATGTCAACCTGAAGCCTCAGATGTCGCAGTTCCCAGTATACTCTACGGTTGACGGTAAAGTTATCTCGGGTAAACAGTTTGACAGTCATTACTGGTGGCGAAACATACGTTGTCAAGTCAAGTTACAGGCAGCGATCAAGCAGCTGCTAAAAGATGGTTACAAGCAGATGATTGAAATAAGTACCCAACCTATTTTAGCCCGCCATGTCAAGCAGATTGCCCTTCATGAAAACCAAGCAGTTCCCATTGTCATGGCAGCACATCCTCGCAAAAGCGTACCTGTTAACGACCAGCACAAGTGGTTTCTTCAGAACACAGTTTGTAAACTTTACACGCTGGGATTTTCCATAGATTGGAAGTGTGTGCCGGGCTTTCCATCACCCAAATTTTTCCGTATGCTCCACTATCCGCGGCTGGATAGCAGACCTCTTAAAAGTGACAAATGTCCAAAGAAGCAAACACACCCATTTCGAGAGGTGGAAATGACCGGCCTGTATTCAGACATGCACTGCTGGGAGACTGAGATTGACCTCCACTTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E0D202	Polyketide synthase GfsA OS=Streptomyces halstedii OX=1944 GN=gfsA PE=1 SV=2
Q03132	Erythronolide synthase EryA2 OS=Saccharopolyspora erythraea OX=1836 GN=eryA PE=1 SV=3
Q03133	Erythronolide synthase EryA3 OS=Saccharopolyspora erythraea OX=1836 GN=eryA PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000656 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00698 all species →	Acyl_transf_1	Acyl transferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR014043 all species →	Domain	Acyl transferase	Interproscan
IPR001227 all species →	Homologous_superfamily	Acyl transferase domain superfamily	Interproscan
IPR016036 all species →	Homologous_superfamily	Malonyl-CoA ACP transacylase, ACP-binding	Interproscan
IPR050091 all species →	Family	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43775 all species →	FATTY ACID SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0004312 all species →	Molecular Function	fatty acid synthase activity	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.2848.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.