Gene detail

Detailed information of evm.model.Ap6.2956 in Astrangia poculata

Genomic Location: Ap6:30137757...30148244
NR annotation: XP_020622900.1, zinc finger MYND domain-containing protein 11-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R5C8	Zinc finger MYND domain-containing protein 11 OS=Mus musculus OX=10090 GN=Zmynd11 PE=1 SV=2
Q9ULU4	MYND-type zinc finger-containing chromatin reader ZMYND8 OS=Homo sapiens OX=9606 GN=ZMYND8 PE=1 SV=2
Q6E2N3	E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio OX=7955 GN=trim33 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006550 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF21524 all species →	SAMD1_WH	SAM domain-containing protein 1, WH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048589 all species →	Domain	SAM domain-containing protein 1-like, WH domain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR047269 all species →	Family	Zinc finger MYND domain-containing protein 11	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR044075 all species →	Domain	PRKCBP1, PHD finger	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR047268 all species →	Domain	Zinc finger MYND domain-containing protein 11, PWWP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46379 all species →	ZINC FINGER MYND DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan
GO:0034243 all species →	Biological Process	regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23218	ZMYND11, BS69; zinc finger MYND domain-containing protein 11	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.