Detailed information of evm.model.Ap6.2957 in Astrangia poculata

Genomic Location: Ap6:30150389...30154927
NR annotation: KAJ7386920.1, Akirin-2 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6GQB5Akirin-2 OS=Xenopus laevis OX=8355 GN=akirin2.S PE=1 SV=1
B1AXD8Akirin-2 OS=Mus musculus OX=10090 GN=Akirin2 PE=1 SV=1
Q25C79Akirin-2 OS=Rattus norvegicus OX=10116 GN=Akirin2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008802 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap6.2957. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR024132
all species →		FamilyAkirinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13293
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000785
all species →		Cellular ComponentchromatinInterproscan
GO:0003712
all species →		Molecular Functiontranscription coregulator activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0045089
all species →		Biological Processpositive regulation of innate immune responseInterproscan
GO:0045944
all species →		Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap6.2957.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap6.2957 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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