Gene detail

Detailed information of evm.model.Ap6.2965 in Astrangia poculata

Genomic Location: Ap6:30199954...30221605
NR annotation: CAH3120801.1, unnamed protein product, partial [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.2965

atgagagctgttgtgcaccttttggtggtttttctttccattcttgcagtcgattgttggttggataattcttataactcttgcccagcgaaatatggctcagtaaaatacgtcaaagttggttgcttcaatgacaaaacggagcaaagggcattaaaacaccttttatttcaagatcgagacaaaaactacaatagcacatacagtggtcaaaagattgactgggaacagtggaaaacctatctaccagaactagtttgccgctgtggagacgccgcccgccaaaacggtcaagctttctttgcaatccaattttacggtgaatgctggacaagcatggacgcaaatgaccattacgatcagtacgggcaaagcgaccaatgtaaaaacacggactttgaaaactgccatgatgatgacaatgctgaggcgtgcaccggggtgacacacaccaattacgtctacgagatagtgcaagcaatcgacggtggctacactgactggaaggcgcacaactgtagcacaacatgcggatgtggagtgagaaaattcacaagaacttgtacgagccccccaccacagtacggaggaaagccttgcattggagcatccgagaaaattgagccttgcaatttaggaccctgtcctctgacgccatgctcaaatgctatcgatatggcaatattactggatgcttctcgcagcgtaaataaaagtcaatttaaacagttgaagcagtttgccttggctctggccagaaatattgacctgtcaggtgaggcccgccttggtctcattatcttcaacagtaaagcaagacttcgcctggcctttgatgaaagcaacaagcaaaaccttgaatacgttgaaaaaacacttgacaaagagaaacgggataggaagtggaacactagaattgacttagcgcttcagaaggccaacaacatgttattcacccaaacaggaaacgaagataacaaagctaaagttttggttctgctgacggacggaaaatcccatccgcaagttaatgaatatgggtctttcgtgggaccactaaagactcttaattttgataggtttaataatgatgatgatgatgatgacgataatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgataatgatgacaaaaaggacgtggatatatttgcagttggaattggacccgatgttcggaaagacgaacttctaaatattgtgtcaggaagaaaagagaggctgttcatggttcatgatttccattctctctccactatcctggaagatgtgttgcgtgacgcttgtgaagcgatttatccggtggatagcgttatccaccctttgaacaacctggccctggctcatccggttcaggacttgattcagatttctagaaatggagcagacgcgatgggatatgctgagggaatggataactcttgcccagagaaatatgcctcagtaaaatacgtcaaagttggttgcttcaatgacaaaacggagcgaagggcattaaaacaccttttatttcaagatcgagacaaagggtacaagagtacatacagtggtcaaaagattgactgggaacagtggaaaacctatctaccagaattagtttgccgctgtggagacgccgcccgccaaaacggtcaagctttcttcgcaatccaattttacggtgaatgctggaccagcatggacacaaatgaccattacgatcagtacgggcaaagcaaccaatgtaaaaacacggactttgaaaactgtcacgatgatgacaatgctgaagcgtgctccggggtggcacacaccaattacgtttacaagatagttcaagcaatcgacggtgggtacaaagactgggaggcgtacagctgcagtacaacatgcggagatggagataaaaaattcacaagaacttgtacgaaccccccaccacagtacggaggaaagccttgcattggagcgcccgagaaaattaagccttgcaatttaggaccctgtcctctgacgccatgcttaaatgctatcgatatggcaattttactggatgcttctcaaagcttaaaaagacaacaatttactgagttgaagaagattgtcttggctctggctagtaatattgacctgtcaggtgcagcccgccttggtctcataacctttaacagtaaagcaagacttcgtctgacctttgatgacagcgacaaccaaaaccttgaatacgttaataagacactcggaaaagaaaggctgaaaaaggagactagaattgacttagctcttcaggaggccaacgagaagttatttactcagacagtaaacgaagacaacagagcaaaagttttggttctgatgactgacggaagacagtccatgccgcgagtcaaagactttgggactttcgtggaaccactaaagaaaaagtccgtggatatatttgcagttggagttggaacgaaagttcgggaaaacgaacttctgagtattgtgtcaggaaggaaggagaggctgttcatggttgatgactttgatgatctctttaatatcctagcagatgtgttgcgtgacgcttgtgaaggctcatccggttcaggacttgattcagatttctag

Transcript

evm.model.Ap6.2965

ATGAGAGCTGTTGTGCACCTTTTGGTGGTTTTTCTTTCCATTCTTGCAGTCGATTGTTGGTTGGATAATTCTTATAACTCTTGCCCAGCGAAATATGGCTCAGTAAAATACGTCAAAGTTGGTTGCTTCAATGACAAAACGGAGCAAAGGGCATTAAAACACCTTTTATTTCAAGATCGAGACAAAAACTACAATAGCACATACAGTGGTCAAAAGATTGACTGGGAACAGTGGAAAACCTATCTACCAGAACTAGTTTGCCGCTGTGGAGACGCCGCCCGCCAAAACGGTCAAGCTTTCTTTGCAATCCAATTTTACGGTGAATGCTGGACAAGCATGGACGCAAATGACCATTACGATCAGTACGGGCAAAGCGACCAATGTAAAAACACGGACTTTGAAAACTGCCATGATGATGACAATGCTGAGGCGTGCACCGGGGTGACACACACCAATTACGTCTACGAGATAGTGCAAGCAATCGACGGTGGCTACACTGACTGGAAGGCGCACAACTGTAGCACAACATGCGGATGTGGAGTGAGAAAATTCACAAGAACTTGTACGAGCCCCCCACCACAGTACGGAGGAAAGCCTTGCATTGGAGCATCCGAGAAAATTGAGCCTTGCAATTTAGGACCCTGTCCTCTGACGCCATGCTCAAATGCTATCGATATGGCAATATTACTGGATGCTTCTCGCAGCGTAAATAAAAGTCAATTTAAACAGTTGAAGCAGTTTGCCTTGGCTCTGGCCAGAAATATTGACCTGTCAGGTGAGGCCCGCCTTGGTCTCATTATCTTCAACAGTAAAGCAAGACTTCGCCTGGCCTTTGATGAAAGCAACAAGCAAAACCTTGAATACGTTGAAAAAACACTTGACAAAGAGAAACGGGATAGGAAGTGGAACACTAGAATTGACTTAGCGCTTCAGAAGGCCAACAACATGTTATTCACCCAAACAGGAAACGAAGATAACAAAGCTAAAGTTTTGGTTCTGCTGACGGACGGAAAATCCCATCCGCAAGTTAATGAATATGGGTCTTTCGTGGGACCACTAAAGACTCTTAATTTTGATAGGTTTAATAATGATGATGATGATGATGACGATAATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATAATGATGACAAAAAGGACGTGGATATATTTGCAGTTGGAATTGGACCCGATGTTCGGAAAGACGAACTTCTAAATATTGTGTCAGGAAGAAAAGAGAGGCTGTTCATGGTTCATGATTTCCATTCTCTCTCCACTATCCTGGAAGATGTGTTGCGTGACGCTTGTGAAGCGATTTATCCGGTGGATAGCGTTATCCACCCTTTGAACAACCTGGCCCTGGCTCATCCGGTTCAGGACTTGATTCAGATTTCTAGAAATGGAGCAGACGCGATGGGATATGCTGAGGGAATGGATAACTCTTGCCCAGAGAAATATGCCTCAGTAAAATACGTCAAAGTTGGTTGCTTCAATGACAAAACGGAGCGAAGGGCATTAAAACACCTTTTATTTCAAGATCGAGACAAAGGGTACAAGAGTACATACAGTGGTCAAAAGATTGACTGGGAACAGTGGAAAACCTATCTACCAGAATTAGTTTGCCGCTGTGGAGACGCCGCCCGCCAAAACGGTCAAGCTTTCTTCGCAATCCAATTTTACGGTGAATGCTGGACCAGCATGGACACAAATGACCATTACGATCAGTACGGGCAAAGCAACCAATGTAAAAACACGGACTTTGAAAACTGTCACGATGATGACAATGCTGAAGCGTGCTCCGGGGTGGCACACACCAATTACGTTTACAAGATAGTTCAAGCAATCGACGGTGGGTACAAAGACTGGGAGGCGTACAGCTGCAGTACAACATGCGGAGATGGAGATAAAAAATTCACAAGAACTTGTACGAACCCCCCACCACAGTACGGAGGAAAGCCTTGCATTGGAGCGCCCGAGAAAATTAAGCCTTGCAATTTAGGACCCTGTCCTCTGACGCCATGCTTAAATGCTATCGATATGGCAATTTTACTGGATGCTTCTCAAAGCTTAAAAAGACAACAATTTACTGAGTTGAAGAAGATTGTCTTGGCTCTGGCTAGTAATATTGACCTGTCAGGTGCAGCCCGCCTTGGTCTCATAACCTTTAACAGTAAAGCAAGACTTCGTCTGACCTTTGATGACAGCGACAACCAAAACCTTGAATACGTTAATAAGACACTCGGAAAAGAAAGGCTGAAAAAGGAGACTAGAATTGACTTAGCTCTTCAGGAGGCCAACGAGAAGTTATTTACTCAGACAGTAAACGAAGACAACAGAGCAAAAGTTTTGGTTCTGATGACTGACGGAAGACAGTCCATGCCGCGAGTCAAAGACTTTGGGACTTTCGTGGAACCACTAAAGAAAAAGTCCGTGGATATATTTGCAGTTGGAGTTGGAACGAAAGTTCGGGAAAACGAACTTCTGAGTATTGTGTCAGGAAGGAAGGAGAGGCTGTTCATGGTTGATGACTTTGATGATCTCTTTAATATCCTAGCAGATGTGTTGCGTGACGCTTGTGAAGGCTCATCCGGTTCAGGACTTGATTCAGATTTCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EWY9	Mucin-like protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000474 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16059 all species →	ANTHRAX TOXIN RECEPTOR	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap6.2965. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.2965.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.