Gene detail

Detailed information of evm.model.Ap6.2978 in Astrangia poculata

Genomic Location: Ap6:30319723...30339411
NR annotation: RMX54863.1, hypothetical protein pdam_00011167 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.2978

atggccgcagacttctgctactcagtggaggaaattgatatgaaccgcaccttgcttgtggaagaaggagatgatgatggcaacaacagacaggataagaaaaagagagaaaaagaaaagttccctgatactgcagagaaaaaaaagaaaatggcatttaaaaaggctgatgggaagaaagaacataacaattcactgacaagctcgtccaaagtacagcctgctgaaatggttgatatggctgccgttaaccctgacactgaaggtataacatcaccggtgggatcccctgcagtcaatcttccaggaacaaatgtctacccaggaaacgttgtcattcctccaccgcctaggccagtaactttgcagcaacttccccctcaacatctgcaacaaagagcaaactggccgcaacaacagcagcaaatggctgccgtctatgtggtaccaacacagcagcctcactttattccagctgccttccagtccccagggccaccccctcagcaaatagtcgcagggcagtttgttgcccaaccataccagcagggtcattttgcagtgccacagtatcaccaagctggtgggactcctgttcaaggtgtggtgtacagtggtcaaatagtggcaggaccccacacccatgtgttgacgagagcgcagtccttgccctcctcagctgcacctggaggtgaacaggcacacagctctggctgggtgggacaaccatcaacaagtcctccacctttgaacaatacgacagaatcctcttgggcagcaaaccatgcagctgaacccagggaagaaaggacatggggggaaggtgaaaattcagcgaacggcaacaatacccagtgggcagccttctctccagatgattcatcacataatgcaaacatgtggtcctatgaacttgacgaagagcacagctcaagtgatgaagatgtagatcgtagcagttcaccagagcttgcaggtgaagaaggagaagtgcttctcagggctccatcactagcaagttttgcagaaagtataagtagtcttgaagaagagtctgaagacaatgtgtggcgtatcttgcctgaacaaagagaatactacacaaaacagtttaaaagacttcaaccagctgaagatggagttgttaaaggtcctagagcaagggactttttcatgaagtctagcttaccagtcgaggtgctgtccaaaatatggcaactgtcagacataaacaaggataatgctcttaatttagatgagttctgtattgcgatgcatcttgtggtagcactgcggcatggcttggagctgccatcaactctgcctgctgtcttgttaccagtgaagaaggaagctggagtgggtttacatccacttgaaactttacaacaaaaagtggaaaatgaagaaaatgaagtgagagagagggtttcttctccagagcactggtatcgttttagtggttctcacagtcacgatgctacttcgccacctgctaactttagcaactctgctgtaaggaagaaggcacactccgttgtccaacccataccactaagaggtgacattcaaggagatgaagacactgctgcaaggcccagatcgctttctgatccaacttcattagaagactcagctacagatggacccgcacacaggaatactaaccttgctggccccaaacctgttaatcctcttcatatcgttatgcctcaatctcctgcccagcaagctgaagcaccgcagactgggccaaccagtcctagccaagcagtaacggcagagattgagatagcaagaccaagagcagtgatcaaaccgagcctgcttgatgctcgtcctggtcagctactgccaccaccttcaggaaaacaagctcgtgaaggctggacacccaccagtaagttcatctatcaaggacatggaccttcgtcatcacctccgtcgtcacctgaagaggacactcccacgtcaccgctttcacctgatggattaaagactccctctcctccgcctctagcacaggaggcagaggaggaagaaagacctaaggaagaggatggcaaagaagaagtagtgtatcgagtaaacaggagaagtggtgagagacccaggtcaactggagatgtgaaaattaataataaaaatgagtctagtttgccttcaacaccagtggatgaagagggtccgagctctgtgtcttcagaaggaagaaaagatcctccacccccaccacctagaaacaagaaaggtcactcaaggtcctcttcgttggatctcaacaagctctttgctacaaaggccaaggaaaatagaggtacaccaccatcttcatcttcaagcttttcaagtcagactggtgacagtgtacctccagcaaagagtgaaccatcaacaccaagacacaaagatgagaattccaccggcagcaaagagaaaatagaagataatcatactaaagtagagaagcaggaagattttgctgacttcagcagatttgagagttttgtggaatcacagggagaacgaagaagagcttcatcccctcgtcctggacagcacagaagatcattttcactggaccattctcgtgaggtagtctggtcgcaacctccacctgctcagaaacctcccagtgaagcagctgctactacacctagcagaccacctcacaatcaggaagctctgcccagaccagttcccaagttgaaacctccaagccctcctactttgaaacaaggaaggcgattagacaaagatggagaaaaagaaagaaaacttaaaacggagccgccaaaagttattgtaaggccccttaccaaggaggacaaattaaattcgagaataaatgatctgaaggaaaagaatgctgcgctttcaaaagttaacagcgaacttcaagaggaccttaaaacgataatggaaagtcgagcatcgctggaaattaaactggagaagctcaaatcaccttcaagttcaagcgatttcaaggttgcaaagccgactaaaactcaagcaaaatggttggattatgaagtaggagcaattgtccacttcaacatgcaaacatttgaccgcttcatgaaaccaggttctgtggcgcctgcagacaccttcaatccacaaaaactctcaaccgatcaatgggctgaagcggcgaaaagctttggcgcaaaatacatcatttttactattgatcacttcagtggattcctaatgtggccgagcgaaacaaactacaattactctgttaaatatacaaaatggcgggacggcaagggcaatatcctgtccgattttatgaagtccagccaaaagtatggtctggactatggattcttttatagcgtgcacaacaactggtatatgggggtggacaactatacaactggggacgcatcaactcaagagcgctatcaaaaagtggtagaagaacaaatgcgagagttattcaatgcgaactcaccatataaagatcctttctatatttggtttgatgctggtattgttccaggggtgagtcctaatgttggaccaatcatacgcaagctcgcaaataactcattgtgtgacgaatgtcccacttttgctggggatcaaggcttgcggtgggttggtaatgaaaatgccatggcgcctttacctcattggtatgccgtgcccaaaggaaagtgttccatgaagacaaatgatggaaaagtgattcaaggaaatccgtggggtcagctattttgccccgctaattgtgatacagtgattcgtcaacacttttggttttggcaacctaacacggagtactcagtgaaatgtatccgcaggcttgtacgcgaatatctgacaagcgtgggacatggatgcaccttgctcctaaacctcaatcccgatacccgcgggttggtacccgagaaagatctctccgcatatgaagaattgggcaaagctattgcactgttgtataaacaccccgtaagcaaattcgttagccctgaactgcatgtgggaacggaaaaaatatggaagtttaaggcatttcaaagtctgaatggttctgttgttctcatggaagatattgcgaaatctgggcagttagttatgaaatacgaattaaaattggaaactgaagatggctggatatcaactcccgagacaggaagcactataggacataagagaatccatccttttccaaaagcatcagcaaacaaaaaagtgtctgcaatcagtttaaagataaataggctcgtaacgaaacaaaaatctatatctttgagggaagtttccgtttacaactggaatgaagcagcgaaacaacatttgatttaa

Transcript

evm.model.Ap6.2978

ATGGCCGCAGACTTCTGCTACTCAGTGGAGGAAATTGATATGAACCGCACCTTGCTTGTGGAAGAAGGAGATGATGATGGCAACAACAGACAGGATAAGAAAAAGAGAGAAAAAGAAAAGTTCCCTGATACTGCAGAGAAAAAAAAGAAAATGGCATTTAAAAAGGCTGATGGGAAGAAAGAACATAACAATTCACTGACAAGCTCGTCCAAAGTACAGCCTGCTGAAATGGTTGATATGGCTGCCGTTAACCCTGACACTGAAGGTATAACATCACCGGTGGGATCCCCTGCAGTCAATCTTCCAGGAACAAATGTCTACCCAGGAAACGTTGTCATTCCTCCACCGCCTAGGCCAGTAACTTTGCAGCAACTTCCCCCTCAACATCTGCAACAAAGAGCAAACTGGCCGCAACAACAGCAGCAAATGGCTGCCGTCTATGTGGTACCAACACAGCAGCCTCACTTTATTCCAGCTGCCTTCCAGTCCCCAGGGCCACCCCCTCAGCAAATAGTCGCAGGGCAGTTTGTTGCCCAACCATACCAGCAGGGTCATTTTGCAGTGCCACAGTATCACCAAGCTGGTGGGACTCCTGTTCAAGGTGTGGTGTACAGTGGTCAAATAGTGGCAGGACCCCACACCCATGTGTTGACGAGAGCGCAGTCCTTGCCCTCCTCAGCTGCACCTGGAGGTGAACAGGCACACAGCTCTGGCTGGGTGGGACAACCATCAACAAGTCCTCCACCTTTGAACAATACGACAGAATCCTCTTGGGCAGCAAACCATGCAGCTGAACCCAGGGAAGAAAGGACATGGGGGGAAGGTGAAAATTCAGCGAACGGCAACAATACCCAGTGGGCAGCCTTCTCTCCAGATGATTCATCACATAATGCAAACATGTGGTCCTATGAACTTGACGAAGAGCACAGCTCAAGTGATGAAGATGTAGATCGTAGCAGTTCACCAGAGCTTGCAGGTGAAGAAGGAGAAGTGCTTCTCAGGGCTCCATCACTAGCAAGTTTTGCAGAAAGTATAAGTAGTCTTGAAGAAGAGTCTGAAGACAATGTGTGGCGTATCTTGCCTGAACAAAGAGAATACTACACAAAACAGTTTAAAAGACTTCAACCAGCTGAAGATGGAGTTGTTAAAGGTCCTAGAGCAAGGGACTTTTTCATGAAGTCTAGCTTACCAGTCGAGGTGCTGTCCAAAATATGGCAACTGTCAGACATAAACAAGGATAATGCTCTTAATTTAGATGAGTTCTGTATTGCGATGCATCTTGTGGTAGCACTGCGGCATGGCTTGGAGCTGCCATCAACTCTGCCTGCTGTCTTGTTACCAGTGAAGAAGGAAGCTGGAGTGGGTTTACATCCACTTGAAACTTTACAACAAAAAGTGGAAAATGAAGAAAATGAAGTGAGAGAGAGGGTTTCTTCTCCAGAGCACTGGTATCGTTTTAGTGGTTCTCACAGTCACGATGCTACTTCGCCACCTGCTAACTTTAGCAACTCTGCTGTAAGGAAGAAGGCACACTCCGTTGTCCAACCCATACCACTAAGAGGTGACATTCAAGGAGATGAAGACACTGCTGCAAGGCCCAGATCGCTTTCTGATCCAACTTCATTAGAAGACTCAGCTACAGATGGACCCGCACACAGGAATACTAACCTTGCTGGCCCCAAACCTGTTAATCCTCTTCATATCGTTATGCCTCAATCTCCTGCCCAGCAAGCTGAAGCACCGCAGACTGGGCCAACCAGTCCTAGCCAAGCAGTAACGGCAGAGATTGAGATAGCAAGACCAAGAGCAGTGATCAAACCGAGCCTGCTTGATGCTCGTCCTGGTCAGCTACTGCCACCACCTTCAGGAAAACAAGCTCGTGAAGGCTGGACACCCACCAGTAAGTTCATCTATCAAGGACATGGACCTTCGTCATCACCTCCGTCGTCACCTGAAGAGGACACTCCCACGTCACCGCTTTCACCTGATGGATTAAAGACTCCCTCTCCTCCGCCTCTAGCACAGGAGGCAGAGGAGGAAGAAAGACCTAAGGAAGAGGATGGCAAAGAAGAAGTAGTGTATCGAGTAAACAGGAGAAGTGGTGAGAGACCCAGGTCAACTGGAGATGTGAAAATTAATAATAAAAATGAGTCTAGTTTGCCTTCAACACCAGTGGATGAAGAGGGTCCGAGCTCTGTGTCTTCAGAAGGAAGAAAAGATCCTCCACCCCCACCACCTAGAAACAAGAAAGGTCACTCAAGGTCCTCTTCGTTGGATCTCAACAAGCTCTTTGCTACAAAGGCCAAGGAAAATAGAGGTACACCACCATCTTCATCTTCAAGCTTTTCAAGTCAGACTGGTGACAGTGTACCTCCAGCAAAGAGTGAACCATCAACACCAAGACACAAAGATGAGAATTCCACCGGCAGCAAAGAGAAAATAGAAGATAATCATACTAAAGTAGAGAAGCAGGAAGATTTTGCTGACTTCAGCAGATTTGAGAGTTTTGTGGAATCACAGGGAGAACGAAGAAGAGCTTCATCCCCTCGTCCTGGACAGCACAGAAGATCATTTTCACTGGACCATTCTCGTGAGGTAGTCTGGTCGCAACCTCCACCTGCTCAGAAACCTCCCAGTGAAGCAGCTGCTACTACACCTAGCAGACCACCTCACAATCAGGAAGCTCTGCCCAGACCAGTTCCCAAGTTGAAACCTCCAAGCCCTCCTACTTTGAAACAAGGAAGGCGATTAGACAAAGATGGAGAAAAAGAAAGAAAACTTAAAACGGAGCCGCCAAAAGTTATTGTAAGGCCCCTTACCAAGGAGGACAAATTAAATTCGAGAATAAATGATCTGAAGGAAAAGAATGCTGCGCTTTCAAAAGTTAACAGCGAACTTCAAGAGGACCTTAAAACGATAATGGAAAGTCGAGCATCGCTGGAAATTAAACTGGAGAAGCTCAAATCACCTTCAAGTTCAAGCGATTTCAAGGTTGCAAAGCCGACTAAAACTCAAGCAAAATGGTTGGATTATGAAGTAGGAGCAATTGTCCACTTCAACATGCAAACATTTGACCGCTTCATGAAACCAGGTTCTGTGGCGCCTGCAGACACCTTCAATCCACAAAAACTCTCAACCGATCAATGGGCTGAAGCGGCGAAAAGCTTTGGCGCAAAATACATCATTTTTACTATTGATCACTTCAGTGGATTCCTAATGTGGCCGAGCGAAACAAACTACAATTACTCTGTTAAATATACAAAATGGCGGGACGGCAAGGGCAATATCCTGTCCGATTTTATGAAGTCCAGCCAAAAGTATGGTCTGGACTATGGATTCTTTTATAGCGTGCACAACAACTGGTATATGGGGGTGGACAACTATACAACTGGGGACGCATCAACTCAAGAGCGCTATCAAAAAGTGGTAGAAGAACAAATGCGAGAGTTATTCAATGCGAACTCACCATATAAAGATCCTTTCTATATTTGGTTTGATGCTGGTATTGTTCCAGGGGTGAGTCCTAATGTTGGACCAATCATACGCAAGCTCGCAAATAACTCATTGTGTGACGAATGTCCCACTTTTGCTGGGGATCAAGGCTTGCGGTGGGTTGGTAATGAAAATGCCATGGCGCCTTTACCTCATTGGTATGCCGTGCCCAAAGGAAAGTGTTCCATGAAGACAAATGATGGAAAAGTGATTCAAGGAAATCCGTGGGGTCAGCTATTTTGCCCCGCTAATTGTGATACAGTGATTCGTCAACACTTTTGGTTTTGGCAACCTAACACGGAGTACTCAGTGAAATGTATCCGCAGGCTTGTACGCGAATATCTGACAAGCGTGGGACATGGATGCACCTTGCTCCTAAACCTCAATCCCGATACCCGCGGGTTGGTACCCGAGAAAGATCTCTCCGCATATGAAGAATTGGGCAAAGCTATTGCACTGTTGTATAAACACCCCGTAAGCAAATTCGTTAGCCCTGAACTGCATGTGGGAACGGAAAAAATATGGAAGTTTAAGGCATTTCAAAGTCTGAATGGTTCTGTTGTTCTCATGGAAGATATTGCGAAATCTGGGCAGTTAGTTATGAAATACGAATTAAAATTGGAAACTGAAGATGGCTGGATATCAACTCCCGAGACAGGAAGCACTATAGGACATAAGAGAATCCATCCTTTTCCAAAAGCATCAGCAAACAAAAAAGTGTCTGCAATCAGTTTAAAGATAAATAGGCTCGTAACGAAACAAAAATCTATATCTTTGAGGGAAGTTTCCGTTTACAACTGGAATGAAGCAGCGAAACAACATTTGATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8GW72	Alpha-L-fucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=FUC1 PE=1 SV=2
Q7XUR3	Putative alpha-L-fucosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0560400 PE=3 SV=2
Q9QXY6	EH domain-containing protein 3 OS=Mus musculus OX=10090 GN=Ehd3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002995 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01120 all species →	Alpha_L_fucos	Alpha-L-fucosidase	Domain	Interproscan
PF12763 all species →	EF-hand_4	Cytoskeletal-regulatory complex EF hand	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR000933 all species →	Family	Glycoside hydrolase, family 29	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR000261 all species →	Domain	EH domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10030 all species →	ALPHA-L-FUCOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0004560 all species →	Molecular Function	alpha-L-fucosidase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0006004 all species →	Biological Process	fucose metabolic process	Interproscan
GO:0016139 all species →	Biological Process	glycoside catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.2978.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.