Gene detail

Detailed information of evm.model.Ap6.30 in Astrangia poculata

Genomic Location: Ap6:233487...245435
NR annotation: XP_020626272.1, procollagen-lysine,2-oxoglutarate 5-dioxygenase 3-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.30

atgtctagaggaattctttggtgtgttagctgtattgttttagctatcttggctgtacttttaactggtgtacgtagtgagcaacaaggattggatgagctgaaactgctcgccataacggtggcaacagacgaaacagatggctataaaagatttatgagatctgctaaagctaacaacatcgatgttaaggtacttgggatgggcgaggaatggcgtggtggggatatgtcgaaacctggcggtggatacaaaatcaaccttcttaaaaaggaaacagaactccacaagaatgaaagcaatctggtgctgatgtttgtggacagctatgatgtgatattactagcaaatcctcaagaattcctgaaaaagtttctggattttaatgttaacatggtcttttctgccgaagggttctgctggccagacagatggctcaaggaccaatacccagaggtttctcatggaaagaaatatctttgttcaggaggttttataggttacgcatcaacattccaccaggttgtggctgatcatgccattgaagatgtcgaggacgaccagctctattacaccaagatttttttggacaagcaaaaaagggatgagttaaaaatgaagcttgataacaaagcagacatcttcatgaacctaaatggagcagaagaggaagttgaaatcaagttcagtggtgcaaaggcgtggctggagaataaggaatatggaactcaaccacttgtggcccatggcaatggtcctagcaagctgtttctaaactacctggacaactatctgcctgataaatggaacttacaagatggttgcactgcttgttctgaggatacaatatctttagacaatctcaagcaagaggagtatcctaaaatcttgatgggatggtttataaaagaaccaacacccttcataccggagtttttgaagagaatgatgaaactggattatcctaaaaaacgcattgatctcctaatccacaatacagttccataccataagtctcaaatcggtgaatggttaacagatgagatcaagaatcagttcaactctctcactgtactgcagcctgaagacaacattaatgagtaccaggccagaaatcgcgctgttgagatgtgtaaagataagaactgtgactactttttctctgttgatggctctgttgttcttaccaacaaggacacactgaagattctcatcaaacaaaacagacccgtattagcacctattatgtcaaagcacggcaaactgtggtcaaacttctggggcaaactgggttctgatggatactatgctcgctcaagtgattatcttgctattgtccagaagcagagaatgggtgtatggaattctcccttcatcacaaacatttacttgatccaaaaacaagtcttgaaacagatgaaaggaagttatgggccttctaaggttgattcagacatggctatgtgccaatatctgagagatcagggaattttcatgtatgccaccaatcttcatgagtttggacgtttgctggagacagaaaattacaacacaaatcatttgcacaatgatttatgggaattatttgataacagagtggattgggaggagaaatacattcatgaaaactattctcaaaacttaaacctcagcattcctattgaagagccttgtcctgatgtgtattggtttcctattgtgacggacacatttgcgatacagcttattgaggaaatggaacattttggtgactggtctggaggaagacatgaggataagcgactatcaggaggctatgagaatgtacccactgacgacatacacatgaaccagattggctatgagagacactggctccactttctcaaagagttcattgtacctgtaaacaccagactttaccctggctattactctgaggctcgttctatcatgaactttgttgtaaagtacgatcccaaccgacagtactacctcagacctcaccacgactcatccacgtataccatcaacatcgctttgaccaggcctggcatcgaccatggaggcgggggatgcaggtttttgcggtataactgtcaagtcacggaaactcgtagaggctggtctttcatgcacccaggacgactcacccattaccacgagggactgccagtgacatggggaaggcgctatattatgatctcatttatagacccttga

Transcript

evm.model.Ap6.30

TTCGCGTCTCGGTGGAGTGACGCAAAGATGTCTAGAGGAATTCTTTGGTGTGTTAGCTGTATTGTTTTAGCTATCTTGGCTGTACTTTTAACTGGTGTACGTAGTGAGCAACAAGGATTGGATGAGCTGAAACTGCTCGCCATAACGGTGGCAACAGACGAAACAGATGGCTATAAAAGATTTATGAGATCTGCTAAAGCTAACAACATCGATGTTAAGGTACTTGGGATGGGCGAGGAATGGCGTGGTGGGGATATGTCGAAACCTGGCGGTGGATACAAAATCAACCTTCTTAAAAAGGAAACAGAACTCCACAAGAATGAAAGCAATCTGGTGCTGATGTTTGTGGACAGCTATGATGTGATATTACTAGCAAATCCTCAAGAATTCCTGAAAAAGTTTCTGGATTTTAATGTTAACATGGTCTTTTCTGCCGAAGGGTTCTGCTGGCCAGACAGATGGCTCAAGGACCAATACCCAGAGGTTTCTCATGGAAAGAAATATCTTTGTTCAGGAGGTTTTATAGGTTACGCATCAACATTCCACCAGGTTGTGGCTGATCATGCCATTGAAGATGTCGAGGACGACCAGCTCTATTACACCAAGATTTTTTTGGACAAGCAAAAAAGGGATGAGTTAAAAATGAAGCTTGATAACAAAGCAGACATCTTCATGAACCTAAATGGAGCAGAAGAGGAAGTTGAAATCAAGTTCAGTGGTGCAAAGGCGTGGCTGGAGAATAAGGAATATGGAACTCAACCACTTGTGGCCCATGGCAATGGTCCTAGCAAGCTGTTTCTAAACTACCTGGACAACTATCTGCCTGATAAATGGAACTTACAAGATGGTTGCACTGCTTGTTCTGAGGATACAATATCTTTAGACAATCTCAAGCAAGAGGAGTATCCTAAAATCTTGATGGGATGGTTTATAAAAGAACCAACACCCTTCATACCGGAGTTTTTGAAGAGAATGATGAAACTGGATTATCCTAAAAAACGCATTGATCTCCTAATCCACAATACAGTTCCATACCATAAGTCTCAAATCGGTGAATGGTTAACAGATGAGATCAAGAATCAGTTCAACTCTCTCACTGTACTGCAGCCTGAAGACAACATTAATGAGTACCAGGCCAGAAATCGCGCTGTTGAGATGTGTAAAGATAAGAACTGTGACTACTTTTTCTCTGTTGATGGCTCTGTTGTTCTTACCAACAAGGACACACTGAAGATTCTCATCAAACAAAACAGACCCGTATTAGCACCTATTATGTCAAAGCACGGCAAACTGTGGTCAAACTTCTGGGGCAAACTGGGTTCTGATGGATACTATGCTCGCTCAAGTGATTATCTTGCTATTGTCCAGAAGCAGAGAATGGGTGTATGGAATTCTCCCTTCATCACAAACATTTACTTGATCCAAAAACAAGTCTTGAAACAGATGAAAGGAAGTTATGGGCCTTCTAAGGTTGATTCAGACATGGCTATGTGCCAATATCTGAGAGATCAGGGAATTTTCATGTATGCCACCAATCTTCATGAGTTTGGACGTTTGCTGGAGACAGAAAATTACAACACAAATCATTTGCACAATGATTTATGGGAATTATTTGATAACAGAGTGGATTGGGAGGAGAAATACATTCATGAAAACTATTCTCAAAACTTAAACCTCAGCATTCCTATTGAAGAGCCTTGTCCTGATGTGTATTGGTTTCCTATTGTGACGGACACATTTGCGATACAGCTTATTGAGGAAATGGAACATTTTGGTGACTGGTCTGGAGGAAGACATGAGGATAAGCGACTATCAGGAGGCTATGAGAATGTACCCACTGACGACATACACATGAACCAGATTGGCTATGAGAGACACTGGCTCCACTTTCTCAAAGAGTTCATTGTACCTGTAAACACCAGACTTTACCCTGGCTATTACTCTGAGGCTCGTTCTATCATGAACTTTGTTGTAAAGTACGATCCCAACCGACAGTACTACCTCAGACCTCACCACGACTCATCCACGTATACCATCAACATCGCTTTGACCAGGCCTGGCATCGACCATGGAGGCGGGGGATGCAGGTTTTTGCGGTATAACTGTCAAGTCACGGAAACTCGTAGAGGCTGGTCTTTCATGCACCCAGGACGACTCACCCATTACCACGAGGGACTGCCAGTGACATGGGGAAGGCGCTATATTATGATCTCATTTATAGACCCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U367	Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 OS=Rattus norvegicus OX=10116 GN=Plod3 PE=1 SV=1
O60568	Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 OS=Homo sapiens OX=9606 GN=PLOD3 PE=1 SV=1
Q9R0E1	Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 OS=Mus musculus OX=10090 GN=Plod3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004076 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03171 all species →	2OG-FeII_Oxy	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR050757 all species →	Family	Collagen-modifying Glycosyltransferase 25	Interproscan
IPR044861 all species →	Domain	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR006620 all species →	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10730 all species →	PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0008475 all species →	Molecular Function	procollagen-lysine 5-dioxygenase activity	Interproscan
GO:0017185 all species →	Biological Process	peptidyl-lysine hydroxylation	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418 all species →	Molecular Function	L-ascorbic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13646	PLOD3; lysyl hydroxylase/galactosyltransferase/glucosyltransferase	EC:1.14.11.4 EC:2.4.1.50 EC:2.4.1.66	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.