Gene detail

Detailed information of evm.model.Ap6.300 in Astrangia poculata

Genomic Location: Ap6:2709095...2721274
NR annotation: KAJ7394466.1, hypothetical protein OS493_000277, partial [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.300

atgttaccatattacgtacgtgtgtacaccttatttataccgaccacaactggtcctgttgtattcacagatgtttcaaatctctttccaggacccactcttgacgcttttcttcttagcaatttgcaccgcaactgtagtcctgatgggatccctagcaatgaattgcagtgggaagaaaacattcgtaatttaacacagcgcttctatataagatggtacagttgtgaaagtcgctgtggagtgcaggagagaaacacttttcggcaacaaaaatgttactgtgatgagctttgtgaagactttggtgactgttgttttgacttcaattcatcatgtcaagcgcatgtttatcctcagacaagtcgttggacctcaaatgaaacatgtttggtaccagaaggtgtaatacatccattgtacattagctttgcagtttggaacacctgcccgaaaaactggaccgatataattgtgcgacaacaatgccaggatgaagatcaaaatgaccttttgaggaatctgccagtatttgacaaagacagtgacgtgcattacagaaatatattttgcgcaaggtgcaatggtgcagtaaatacggctttctggaagctccgattcgaatgcaacagtaacggatcgtctaatctggaaagcgttaatttaggcagtgataagatccttttacctaaccctgagaattgcttgattgacaaattaccagaaccaactgagttactatatcacctaaaacgatgcattcctcggtttcaagactgtcactatatcagcccgcagaaaaatggatcatactgccaaactgagtgtctgagatacgcttttccagtgtgctctcaaaacataagatttagaaacccacagtgcgctttgtgtaatggttttaagctaaatgatctggatagcggatgtgagatggatgatcatggagtaatatcatcgcttaccattctttttgattttagttccacttctaagtacactgttcaagttaaagattggaaaaattatgtttttaagaacactgaaaaagagttctcatgtcaaattgacgaggttttcgatcccttctcgggaaactgcaaaaagattgtctcaaccagatcacaaactacaagtcacgagcctgctgaaagcaattacactgaggtacataggggaattagaacaaaactggataatggatccgtcgatgatcatctgccaagcaagcacaacaacagcaaaaactggaatgaaaattgcactgccatagcgtttaataaaaccgacttcgtgcaactatcaaatggctccatctacttgaaaccccacaacaagatatacaacaataagacttacatgattcgtgacagcaaattactgctgtgcgtgaacttttcaagaaattttccatggacggagaaagaagacggtaaacatacgatcactaaaacgccagcattactccagcttctttctgcaatcggatgtatagtgtcgatggtttctctagttcttctgctgatgtcgtatatcctgtttgctgaactccgcaacttaaccgggaagatcataataaacttggcattgtctctattgttgtaccaaagcgtcttcctttcagcggtcaaatccgacgatcataacgcgtgcctggcaattgcagttcttcttcatttctttgttctctcttcctttacgtggatgtctgttatggcttatgatgttcgtcggattttcactaacgtttcagggcaaggagacgaagaatgtttcatatctcagcctcaagcccttctttattcgtttattttgcctgttgcactgctgataactttcaatctgtttgcattgggacacactgtgatttgcattgtcaaagctcgaaaggtgaggaacttcacttactctgtgatgggtgtcacatggattcttggaattactgccttgaaagctttcattcttgtggtacccgtacgtggttttaaacagtctccaagtggaaaagctttggagttgtacaagagaaaattggccgacatcctgaggaatcgtacaacacagagcgaagaagacaatggaggaaaccattactgtaaccacgccgttgaaaatgaatattcgcgggatacgcagctgtaa

Transcript

evm.model.Ap6.300

ATGTTACCATATTACGTACGTGTGTACACCTTATTTATACCGACCACAACTGGTCCTGTTGTATTCACAGATGTTTCAAATCTCTTTCCAGGACCCACTCTTGACGCTTTTCTTCTTAGCAATTTGCACCGCAACTGTAGTCCTGATGGGATCCCTAGCAATGAATTGCAGTGGGAAGAAAACATTCGTAATTTAACACAGCGCTTCTATATAAGATGGTACAGTTGTGAAAGTCGCTGTGGAGTGCAGGAGAGAAACACTTTTCGGCAACAAAAATGTTACTGTGATGAGCTTTGTGAAGACTTTGGTGACTGTTGTTTTGACTTCAATTCATCATGTCAAGCGCATGTTTATCCTCAGACAAGTCGTTGGACCTCAAATGAAACATGTTTGGTACCAGAAGGTGTAATACATCCATTGTACATTAGCTTTGCAGTTTGGAACACCTGCCCGAAAAACTGGACCGATATAATTGTGCGACAACAATGCCAGGATGAAGATCAAAATGACCTTTTGAGGAATCTGCCAGTATTTGACAAAGACAGTGACGTGCATTACAGAAATATATTTTGCGCAAGGTGCAATGGTGCAGTAAATACGGCTTTCTGGAAGCTCCGATTCGAATGCAACAGTAACGGATCGTCTAATCTGGAAAGCGTTAATTTAGGCAGTGATAAGATCCTTTTACCTAACCCTGAGAATTGCTTGATTGACAAATTACCAGAACCAACTGAGTTACTATATCACCTAAAACGATGCATTCCTCGGTTTCAAGACTGTCACTATATCAGCCCGCAGAAAAATGGATCATACTGCCAAACTGAGTGTCTGAGATACGCTTTTCCAGTGTGCTCTCAAAACATAAGATTTAGAAACCCACAGTGCGCTTTGTGTAATGGTTTTAAGCTAAATGATCTGGATAGCGGATGTGAGATGGATGATCATGGAGTAATATCATCGCTTACCATTCTTTTTGATTTTAGTTCCACTTCTAAGTACACTGTTCAAGTTAAAGATTGGAAAAATTATGTTTTTAAGAACACTGAAAAAGAGTTCTCATGTCAAATTGACGAGGTTTTCGATCCCTTCTCGGGAAACTGCAAAAAGATTGTCTCAACCAGATCACAAACTACAAGTCACGAGCCTGCTGAAAGCAATTACACTGAGGTACATAGGGGAATTAGAACAAAACTGGATAATGGATCCGTCGATGATCATCTGCCAAGCAAGCACAACAACAGCAAAAACTGGAATGAAAATTGCACTGCCATAGCGTTTAATAAAACCGACTTCGTGCAACTATCAAATGGCTCCATCTACTTGAAACCCCACAACAAGATATACAACAATAAGACTTACATGATTCGTGACAGCAAATTACTGCTGTGCGTGAACTTTTCAAGAAATTTTCCATGGACGGAGAAAGAAGACGGTAAACATACGATCACTAAAACGCCAGCATTACTCCAGCTTCTTTCTGCAATCGGATGTATAGTGTCGATGGTTTCTCTAGTTCTTCTGCTGATGTCGTATATCCTGTTTGCTGAACTCCGCAACTTAACCGGGAAGATCATAATAAACTTGGCATTGTCTCTATTGTTGTACCAAAGCGTCTTCCTTTCAGCGGTCAAATCCGACGATCATAACGCGTGCCTGGCAATTGCAGTTCTTCTTCATTTCTTTGTTCTCTCTTCCTTTACGTGGATGTCTGTTATGGCTTATGATGTTCGTCGGATTTTCACTAACGTTTCAGGGCAAGGAGACGAAGAATGTTTCATATCTCAGCCTCAAGCCCTTCTTTATTCGTTTATTTTGCCTGTTGCACTGCTGATAACTTTCAATCTGTTTGCATTGGGACACACTGTGATTTGCATTGTCAAAGCTCGAAAGGTGAGGAACTTCACTTACTCTGTGATGGGTGTCACATGGATTCTTGGAATTACTGCCTTGAAAGCTTTCATTCTTGTGGTACCCGTACGTGGTTTTAAACAGTCTCCAAGTGGAAAAGCTTTGGAGTTGTACAAGAGAAAATTGGCCGACATCCTGAGGAATCGTACAACACAGAGCGAAGAAGACAATGGAGGAAACCATTACTGTAACCACGCCGTTGAAAATGAATATTCGCGGGATACGCAGCTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5ECX0	Latrophilin-like protein LAT-2 OS=Caenorhabditis elegans OX=6239 GN=lat-2 PE=2 SV=1
G5EDW2	Latrophilin-like protein 1 OS=Caenorhabditis elegans OX=6239 GN=lat-1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000178 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF01033 all species →	Somatomedin_B	Somatomedin B domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR053231 all species →	Family	G-protein coupled receptor LN-TM7	Interproscan
IPR001212 all species →	Domain	Somatomedin B domain	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR036024 all species →	Homologous_superfamily	Somatomedin B-like domain superfamily	Interproscan
IPR022343 all species →	Family	GCR1-cAMP receptor	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45902 all species →	LATROPHILIN RECEPTOR-LIKE PROTEIN A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02354	FZD4, fz4, CD344; frizzled 4	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.