Gene detail

Detailed information of evm.model.Ap6.3024 in Astrangia poculata

Genomic Location: Ap6:30857600...30868137
NR annotation: XP_020622749.1, polycomb protein eed-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AZS2	Polycomb protein eed-B OS=Xenopus laevis OX=8355 GN=eed-b PE=1 SV=2
Q28DT7	Polycomb protein eed OS=Xenopus tropicalis OX=8364 GN=eed PE=2 SV=1
Q8UUP2	Polycomb protein eed-A OS=Xenopus laevis OX=8355 GN=eed-a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005578 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR051243 all species →	Family	Polycomb group WD repeat-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10253 all species →	POLYCOMB PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0006342 all species →	Biological Process	heterochromatin formation	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0035098 all species →	Cellular Component	ESC/E(Z) complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11462	EED; polycomb protein EED	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.