Gene detail

Detailed information of evm.model.Ap6.3029 in Astrangia poculata

Genomic Location: Ap6:30937225...30958883
NR annotation: XP_020627313.1, uncharacterized protein LOC110064594 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.3029

atgtcagcaaaagtggcagtttgtttaaatgttgtgtttgaagatgatgataaccaggaaagccttttgtatacaggagacacaatccaggctccattaattcaacctttacaatggacactctgtggaactcctatacaatttactgctacagtaggggtatttcctgaccacctgggaattaaagaaaggtttcaaaccataactgtgatgaaggtctattctggaaagagtactgatgagttacgtttagaagactaccagtatcaaaaaaaacctgccagtggagaattaaatttttcaccagcaagaagtttaggatccggatttggcttccacaccggggcagctgggagaagagtaccaaaccaacaagcaaaatacgggtttaaatcgtcagttgaagtgatgtttccaagcccaatgtccacagattccagtacagacagttctgaagtgctaccatcacacaccttctcactcactccaaccatcgatttcacagcctcgcaatccactgcagatcctgttgatgtatttagtcagtcacaagccacagttgccaaagacaaaccagcagaaactctgagtgttttagagggacgacaacttatggactctctgctcgagagtgttgtcaagtgtatgcaaatccagaactccctccatagacttgtgctactcaagctacaacagcatgctgctatttctgaaggccaaactgatgctgttcctgggcataccaatgcaacagatttatccaaggctcgctccgaggaaagcacaagagagaacccaaattatgatccaggggctctgctgtgtgaactgaaagaaccgttaggggcgttgatgagctgtgcagacattcaaccagcactttttcaaagaatgatcacagtgaacttgttgaccactgaggaacgttcatctgcatgtgaggatcaagaatcgccacaagtcactgagccacaggttaacttactggcagttcagtctgcagttgaagagatcgcatttaaaagtcaaatggtatgtaactacgcgcggaatcctttcactagccaacaactcaaggcttcaactaccaaagatgtcttacaacatatatcagaagataaacgcccattgagcatgcgagcagtcaacagtgtggctcgtagtcaacaagagcttcctcatggtcgtggcagccttaaaactgtgtcaggcaagcttgtgtacagtggagactggcgaaaaggcaagcgacacgggcagggtgaaggcctcattgtctcctttcactcctttccttgtgataagccaaccactgcggaacatggattctacaatggtggatggaaaaacaacatgaggcacggtcgtggaaaaatgacttttgtttctggtgctgtgtatgaaggccagtggcagtatgataaaatgaccggttatgggaccttgaagtttcctgatggcaccattcaggaagggacattgaaggaagggtcactggacggacgtgttctcttcacttggccccatggtgtcactgagtaccgcgagtatgagcaaggtcgaggtcagctgtcttcttgtaaaattgacaaggaaactgctgaaaaggtgtcacagatgagttctattcggtcgcagctcttgaacttacaaggatgcgcggctgagctgaaagacgaaaaccggagccttaaagacgaactgaacatgctgaaaacacatcaagttgagatgactggcgcacaccaagccagtctttgcgaaattcgccaaatctttaacgttcagcgcgagcaggattgccagaaactgcgagaggaattcgaaaataaactgaaagaagcagagacgtctgactcgaaaagcgctgaaagagtacgtgaattagaaaaggagcttgaagaatccaggggagcacagctgtgtcagatttgtttcgagcaaccacgtgactgcatcattatgccctgtactcatttgttgtactgtaggaaatgtgtgactgagcataaaaagaagggtgattcccgctgccctacttgccgcgggcctatatccggtgaaattttatgtaatgtcaatcactga

Transcript

evm.model.Ap6.3029

ATGTCAGCAAAAGTGGCAGTTTGTTTAAATGTTGTGTTTGAAGATGATGATAACCAGGAAAGCCTTTTGTATACAGGAGACACAATCCAGGCTCCATTAATTCAACCTTTACAATGGACACTCTGTGGAACTCCTATACAATTTACTGCTACAGTAGGGGTATTTCCTGACCACCTGGGAATTAAAGAAAGGTTTCAAACCATAACTGTGATGAAGGTCTATTCTGGAAAGAGTACTGATGAGTTACGTTTAGAAGACTACCAGTATCAAAAAAAACCTGCCAGTGGAGAATTAAATTTTTCACCAGCAAGAAGTTTAGGATCCGGATTTGGCTTCCACACCGGGGCAGCTGGGAGAAGAGTACCAAACCAACAAGCAAAATACGGGTTTAAATCGTCAGTTGAAGTGATGTTTCCAAGCCCAATGTCCACAGATTCCAGTACAGACAGTTCTGAAGTGCTACCATCACACACCTTCTCACTCACTCCAACCATCGATTTCACAGCCTCGCAATCCACTGCAGATCCTGTTGATGTATTTAGTCAGTCACAAGCCACAGTTGCCAAAGACAAACCAGCAGAAACTCTGAGTGTTTTAGAGGGACGACAACTTATGGACTCTCTGCTCGAGAGTGTTGTCAAGTGTATGCAAATCCAGAACTCCCTCCATAGACTTGTGCTACTCAAGCTACAACAGCATGCTGCTATTTCTGAAGGCCAAACTGATGCTGTTCCTGGGCATACCAATGCAACAGATTTATCCAAGGCTCGCTCCGAGGAAAGCACAAGAGAGAACCCAAATTATGATCCAGGGGCTCTGCTGTGTGAACTGAAAGAACCGTTAGGGGCGTTGATGAGCTGTGCAGACATTCAACCAGCACTTTTTCAAAGAATGATCACAGTGAACTTGTTGACCACTGAGGAACGTTCATCTGCATGTGAGGATCAAGAATCGCCACAAGTCACTGAGCCACAGGTTAACTTACTGGCAGTTCAGTCTGCAGTTGAAGAGATCGCATTTAAAAGTCAAATGGTATGTAACTACGCGCGGAATCCTTTCACTAGCCAACAACTCAAGGCTTCAACTACCAAAGATGTCTTACAACATATATCAGAAGATAAACGCCCATTGAGCATGCGAGCAGTCAACAGTGTGGCTCGTAGTCAACAAGAGCTTCCTCATGGTCGTGGCAGCCTTAAAACTGTGTCAGGCAAGCTTGTGTACAGTGGAGACTGGCGAAAAGGCAAGCGACACGGGCAGGGTGAAGGCCTCATTGTCTCCTTTCACTCCTTTCCTTGTGATAAGCCAACCACTGCGGAACATGGATTCTACAATGGTGGATGGAAAAACAACATGAGGCACGGTCGTGGAAAAATGACTTTTGTTTCTGGTGCTGTGTATGAAGGCCAGTGGCAGTATGATAAAATGACCGGTTATGGGACCTTGAAGTTTCCTGATGGCACCATTCAGGAAGGGACATTGAAGGAAGGGTCACTGGACGGACGTGTTCTCTTCACTTGGCCCCATGGTGTCACTGAGTACCGCGAGTATGAGCAAGGTCGAGGTCAGCTGTCTTCTTGTAAAATTGACAAGGAAACTGCTGAAAAGGTGTCACAGATGAGTTCTATTCGGTCGCAGCTCTTGAACTTACAAGGATGCGCGGCTGAGCTGAAAGACGAAAACCGGAGCCTTAAAGACGAACTGAACATGCTGAAAACACATCAAGTTGAGATGACTGGCGCACACCAAGCCAGTCTTTGCGAAATTCGCCAAATCTTTAACGTTCAGCGCGAGCAGGATTGCCAGAAACTGCGAGAGGAATTCGAAAATAAACTGAAAGAAGCAGAGACGTCTGACTCGAAAAGCGCTGAAAGAGTACGTGAATTAGAAAAGGAGCTTGAAGAATCCAGGGGAGCACAGCTGTGTCAGATTTGTTTCGAGCAACCACGTGACTGCATCATTATGCCCTGTACTCATTTGTTGTACTGTAGGAAATGTGTGACTGAGCATAAAAAGAAGGGTGATTCCCGCTGCCCTACTTGCCGCGGGCCTATATCCGGTGAAATTTTATGTAATGTCAATCACTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002719 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21240 all species →	Nup98_GLEBS	Nup98, Gle2-binding sequence	Domain	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003409 all species →	Repeat	MORN repeat	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43215 all species →	RADIAL SPOKE HEAD 1 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.3029.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.