Gene detail

Detailed information of evm.model.Ap6.3063 in Astrangia poculata

Genomic Location: Ap6:31253893...31269517
NR annotation: KAJ7363455.1, AT-rich interactive domain-containing protein 1B [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.3063

atggcgcaaactgtccgggtccatgcgagcaacggtggaacaagcggtagtcgcctacaacatcccaataaggtgcctgcgtcgaacacggaacacacaaaacatcattttaaatttccttcaacgggcggagattatttccccgacccgagcttccgcgagaatggttctagtagtgcgctaggctcgcaaactcaaggtattttggaagagctacacgattatattcaaggttctgaccatcagactaacaacaataataaggcaaattccttgcccaacaaaatggcgacgccgaattcaagtggaaccaaccaaccaacggcgaacgctaatggatttcaaatgtccttgaattcatccacgggactgccaaacaagagcggagcgctaggtttggggatgcccgcctccgtacctctaaacaatcaactttcgtcaattctcgacccaggaagttcgtcggcaagcccggccgtaacgtctagaaatcttagtcaatcgaaccctaatcccacaaatatgaaacttttggcatcaaatcagccagctttatcaccacaaaaccggtacaatcaatacaatccgagacaggaaatgctgctccgaggctttcgcgaagttcccatcgctcctagagcgccgaacgtaaccgaacaatatggctcccaacaaaggtttatgtctgcgcagagtgaaaatcaacttaaaagagggttaaattcccaatcgtcgagcgcttatcctccgagttattacgctcaggactcgagcagtcctcaggctggccaaagagcaccgaactcgcagccagatgagagaaatatgatcacaaatcaacattttcaatggcagcagaacagactccagacgtcgaaccattgttcgacaaatttaccaacaaatacttctcccggtccgccgatgagcagagcaccgttgcagcagccgggaataccccaacagcagtcgccttatatgatgatgggtggctcacaacagcaacaacaaccaccacaatctcaacaagcaggtccgcagcagccatatgcaccatacatgatgcagcagggaggcatgaaggcaggggccatgcagcagtcacagccgtactatggtaatatgtctatgggcagacaggttatggggcagtctagtctctcagcacagcctcagcacatggcgaatcaaatgcagaagcctccacaagattatgcaagctttcggcaacaacagcagatgcagcatagatttcctggaggaggcatggagcctcagtttcctcaacaaatgccttacatgcctcaacagcaacaaagacaacagcaacagcaacaaccacagcagcaacaacagcagtcatatccacagcctccaactggaatgccgaggatgccatcctcccatccacagcccatcctacccaaaccagcctcggcagcagacatgtttggagcctccactggtatgaggttcaccagcaacaacgtagcagataacttaccaggtcaggagttccccactaataggatggctactgaccaacagcagcatgggctgccgtcagtatctgtgtcatatgggaatccccctatgggacgcattggtgcgtcttctgatatgatgccaagttatggaagtagtcaaggtgcatatcaacgcagtaatcctccgccatttcctggaaatcttcactccagacacacgccttctcctatacctaatatcaccttggggtcacccttaaggggtgtggctgatggaacgtctccgtcggttggaatgcccagttttggcacagacagcccaacatccacaggaagcatgccaacctaccctccaggtaaactgcctccaccatttggaatgggtggaagccagatgtcaggttcaggagtgtccagcagcaacctccctccagctagtgtgggaggctcaaacttctccactgctggttcaggtgttggtgggaccgctgctgcagctgctgctgctgcagtgcttgaagcggttaactctggatcaaggtaccctagcacggctcaaggtccaggaccgccatatggcaaccctccagacatgatgatgggcagtaaaggctctgacaacatgtctgcctcaggaatgtctccaatgcagttaggctctatgctgggtcctaacgtgcaaacaggtagggcagttaagaatcaacaggtggttcgtaggaagctctggcaggatgttctagaggcgttgaacctacccaccgatcaaccgaatgttgtaaacatccttcgtagtcaatactctagatacctgttgtcgtttgagatgaaattcagcaaaacgaattcgattgatgacatgaagatcaatcttcttgaaggttcaggaattccgcctccaaatgcaacagtgacttgttcagaagcgataataccgaccaacagccttacccagagtcagaggcccacagagacttcgtctgttcacggttcctacaactcgatgacaaacgaatcttctgctaaccttcctccgagttataacatgaaagacggctaccccgagcccagtcttgacagtggtaaaatgttcccagatgttagggacaattctgggaattttcaaatgactccccctgccccctccagtcagtttggaatgccccagtacccgtacggtggagagagaagaaacagttttcctaactacccccagggagggctccctccatacatgatgtcgcagcgtaactatccatcgtccctgtcgcagttctttcagcagtcgagcccacaaacaggacatccagcggcgaacttacagtaccagcagcgtgcaagcccgtcactagcggggcctttatcatcgcctcactccatgatgcccagtgcgagcccacaggaaaagatgcacccattgtggggctctcagtatggcccatcaactgagcctgagcacatggtagactacccccctgggacgcacagtggcagaatctcacgctcgtccagtgggcctccaccccagttctccccggcgccaccgtatggctcgtatccaggccgccaacagagccagtattctcccgccactccaccgtatcgccccagtccttcaccgtctccttcatcaaggcagccaatggcgcagtctccgcttcaggcatcacagaagatgaggtatccttcccaacaaacagcacagcctacacaacagcagcagcagcaacagcaacaacaacaagctcgtgcatcatctataaagagagagatgccctttccaaacgactgcattgaaaccacaagacctgtgtttactaagaagcgcaagctcacgtcccgagacttgggtcccgtggaagcatggcgagtaatgatgtcattgaaatccggtttgctatcagaggcgacctgggctctagataccctgaacatcctgctgtatgacgacaacacggtcgcgtacttcatgttatcacaactgccaggtctccttgacaaccttatcgatcacttccgccgctatttgattgacatttttgacacgtttatcgagagcgagatcactgtgggtgcggtgttcttgcaacaagaacatatagaggttatggagtcctgcgaaagcaatgcggacgacgacgaggggattgaaaagatcaacagagatgcgaaaaatagtttcactgctgtgttggttgggtccacgattgagctcccaaaagacggattccaaagtggctcgagtgactggcttatgggaggaggagatacgactcggcacattcagacacatcttggctctatgcctagagcagaggactcgaccaagaaaagttgtgaaattcaagtcaaggaacccgtgactcgtttaaaaactgtcaacagcgaagaaggggtaaaaatcgaaagtgaacaaacaaagctgtttgaactgagcgagagaaaatccacaactcagtgcgaggatgtacgttgttccagcgaatcgaaatgtggcgctaattgtacaaaacttattaatgatttgtcttctcctactatgtcgggggaaggtgaatctaacgatgacattgttgttaaaaaggaagaactgccacaggagaaattaaaaacgcaagaaaacgataagtgcaccaaagaaagcgaagaggaacagtttacctcgaggttaaaaaaggaacttgatttagacctgaactccgacgaagaggattctgagacagacgcttatattcggtcagttgtaagtaaaattaacgtgaaacaggaagcagttattgaacagcaatcatgcggcaaggaggatgcaccgctgtgtttacgaacggagagtcaagatgccgtctcgcggcgttgtctttgtgtgtcgaacattcttcgtggactttccttcgtcccaggaaacgacgcggaaatgtctcggcacgcggggttgttgctgatcgtcggccggctgttattgctgcatcataaacacgctaaacgagttccttaccggcattcgtatcttcaagatgaaattgaggtagagtgcccgagcgacgaccgacatgattggtggtggtactgcctggaaggtctgcgtgagaacgccttggtgataacagctaatgtggcgggtcagcttgatcttgctctctaccctgaggctatcagtttgcctttgttggacggtttgcttcactggtttgtgtgtccgtcggctgccgcgcaggaccctatgcctacagctactccaggaacctctctctccccgagacagctggtgctggaggctctggccaagatgagcattctggagtcaaatgtggacatgattctcaccactccgcccttaacgcgagtggacgaattgtacaccatgttggttcgtcttgtcggcgagagaggtaatccagtcactcgcgaacttgctctcgtccttctatccaaccttgcacaaggagagaattccttcgttggtttcggcgacagcaaagcttgtatttccatgctgttagaatttatcgaggacgcggcgtccaccatgaacgcgtattcatcgggcagtgctctggcgcaagccggatttcattcggagagtttctgcggtacaagtgtggacatgttacgtcgggctgcctccacgctggtgtgcttggcacgtattcgctcgaatcgcgcgctgttcttgccttttcaggaacgaatcttgaggcttgcagttcaacgaatcctggacagtatgatcgccaatcatttggccgagattctcttctatttatccaggtga

Transcript

evm.model.Ap6.3063

ATGGCGCAAACTGTCCGGGTCCATGCGAGCAACGGTGGAACAAGCGGTAGTCGCCTACAACATCCCAATAAGGTGCCTGCGTCGAACACGGAACACACAAAACATCATTTTAAATTTCCTTCAACGGGCGGAGATTATTTCCCCGACCCGAGCTTCCGCGAGAATGGTTCTAGTAGTGCGCTAGGCTCGCAAACTCAAGGTATTTTGGAAGAGCTACACGATTATATTCAAGGTTCTGACCATCAGACTAACAACAATAATAAGGCAAATTCCTTGCCCAACAAAATGGCGACGCCGAATTCAAGTGGAACCAACCAACCAACGGCGAACGCTAATGGATTTCAAATGTCCTTGAATTCATCCACGGGACTGCCAAACAAGAGCGGAGCGCTAGGTTTGGGGATGCCCGCCTCCGTACCTCTAAACAATCAACTTTCGTCAATTCTCGACCCAGGAAGTTCGTCGGCAAGCCCGGCCGTAACGTCTAGAAATCTTAGTCAATCGAACCCTAATCCCACAAATATGAAACTTTTGGCATCAAATCAGCCAGCTTTATCACCACAAAACCGGTACAATCAATACAATCCGAGACAGGAAATGCTGCTCCGAGGCTTTCGCGAAGTTCCCATCGCTCCTAGAGCGCCGAACGTAACCGAACAATATGGCTCCCAACAAAGGTTTATGTCTGCGCAGAGTGAAAATCAACTTAAAAGAGGGTTAAATTCCCAATCGTCGAGCGCTTATCCTCCGAGTTATTACGCTCAGGACTCGAGCAGTCCTCAGGCTGGCCAAAGAGCACCGAACTCGCAGCCAGATGAGAGAAATATGATCACAAATCAACATTTTCAATGGCAGCAGAACAGACTCCAGACGTCGAACCATTGTTCGACAAATTTACCAACAAATACTTCTCCCGGTCCGCCGATGAGCAGAGCACCGTTGCAGCAGCCGGGAATACCCCAACAGCAGTCGCCTTATATGATGATGGGTGGCTCACAACAGCAACAACAACCACCACAATCTCAACAAGCAGGTCCGCAGCAGCCATATGCACCATACATGATGCAGCAGGGAGGCATGAAGGCAGGGGCCATGCAGCAGTCACAGCCGTACTATGGTAATATGTCTATGGGCAGACAGGTTATGGGGCAGTCTAGTCTCTCAGCACAGCCTCAGCACATGGCGAATCAAATGCAGAAGCCTCCACAAGATTATGCAAGCTTTCGGCAACAACAGCAGATGCAGCATAGATTTCCTGGAGGAGGCATGGAGCCTCAGTTTCCTCAACAAATGCCTTACATGCCTCAACAGCAACAAAGACAACAGCAACAGCAACAACCACAGCAGCAACAACAGCAGTCATATCCACAGCCTCCAACTGGAATGCCGAGGATGCCATCCTCCCATCCACAGCCCATCCTACCCAAACCAGCCTCGGCAGCAGACATGTTTGGAGCCTCCACTGGTATGAGGTTCACCAGCAACAACGTAGCAGATAACTTACCAGGTCAGGAGTTCCCCACTAATAGGATGGCTACTGACCAACAGCAGCATGGGCTGCCGTCAGTATCTGTGTCATATGGGAATCCCCCTATGGGACGCATTGGTGCGTCTTCTGATATGATGCCAAGTTATGGAAGTAGTCAAGGTGCATATCAACGCAGTAATCCTCCGCCATTTCCTGGAAATCTTCACTCCAGACACACGCCTTCTCCTATACCTAATATCACCTTGGGGTCACCCTTAAGGGGTGTGGCTGATGGAACGTCTCCGTCGGTTGGAATGCCCAGTTTTGGCACAGACAGCCCAACATCCACAGGAAGCATGCCAACCTACCCTCCAGGTAAACTGCCTCCACCATTTGGAATGGGTGGAAGCCAGATGTCAGGTTCAGGAGTGTCCAGCAGCAACCTCCCTCCAGCTAGTGTGGGAGGCTCAAACTTCTCCACTGCTGGTTCAGGTGTTGGTGGGACCGCTGCTGCAGCTGCTGCTGCTGCAGTGCTTGAAGCGGTTAACTCTGGATCAAGGTACCCTAGCACGGCTCAAGGTCCAGGACCGCCATATGGCAACCCTCCAGACATGATGATGGGCAGTAAAGGCTCTGACAACATGTCTGCCTCAGGAATGTCTCCAATGCAGTTAGGCTCTATGCTGGGTCCTAACGTGCAAACAGGTAGGGCAGTTAAGAATCAACAGGTGGTTCGTAGGAAGCTCTGGCAGGATGTTCTAGAGGCGTTGAACCTACCCACCGATCAACCGAATGTTGTAAACATCCTTCGTAGTCAATACTCTAGATACCTGTTGTCGTTTGAGATGAAATTCAGCAAAACGAATTCGATTGATGACATGAAGATCAATCTTCTTGAAGGTTCAGGAATTCCGCCTCCAAATGCAACAGTGACTTGTTCAGAAGCGATAATACCGACCAACAGCCTTACCCAGAGTCAGAGGCCCACAGAGACTTCGTCTGTTCACGGTTCCTACAACTCGATGACAAACGAATCTTCTGCTAACCTTCCTCCGAGTTATAACATGAAAGACGGCTACCCCGAGCCCAGTCTTGACAGTGGTAAAATGTTCCCAGATGTTAGGGACAATTCTGGGAATTTTCAAATGACTCCCCCTGCCCCCTCCAGTCAGTTTGGAATGCCCCAGTACCCGTACGGTGGAGAGAGAAGAAACAGTTTTCCTAACTACCCCCAGGGAGGGCTCCCTCCATACATGATGTCGCAGCGTAACTATCCATCGTCCCTGTCGCAGTTCTTTCAGCAGTCGAGCCCACAAACAGGACATCCAGCGGCGAACTTACAGTACCAGCAGCGTGCAAGCCCGTCACTAGCGGGGCCTTTATCATCGCCTCACTCCATGATGCCCAGTGCGAGCCCACAGGAAAAGATGCACCCATTGTGGGGCTCTCAGTATGGCCCATCAACTGAGCCTGAGCACATGGTAGACTACCCCCCTGGGACGCACAGTGGCAGAATCTCACGCTCGTCCAGTGGGCCTCCACCCCAGTTCTCCCCGGCGCCACCGTATGGCTCGTATCCAGGCCGCCAACAGAGCCAGTATTCTCCCGCCACTCCACCGTATCGCCCCAGTCCTTCACCGTCTCCTTCATCAAGGCAGCCAATGGCGCAGTCTCCGCTTCAGGCATCACAGAAGATGAGGTATCCTTCCCAACAAACAGCACAGCCTACACAACAGCAGCAGCAGCAACAGCAACAACAACAAGCTCGTGCATCATCTATAAAGAGAGAGATGCCCTTTCCAAACGACTGCATTGAAACCACAAGACCTGTGTTTACTAAGAAGCGCAAGCTCACGTCCCGAGACTTGGGTCCCGTGGAAGCATGGCGAGTAATGATGTCATTGAAATCCGGTTTGCTATCAGAGGCGACCTGGGCTCTAGATACCCTGAACATCCTGCTGTATGACGACAACACGGTCGCGTACTTCATGTTATCACAACTGCCAGGTCTCCTTGACAACCTTATCGATCACTTCCGCCGCTATTTGATTGACATTTTTGACACGTTTATCGAGAGCGAGATCACTGTGGGTGCGGTGTTCTTGCAACAAGAACATATAGAGGTTATGGAGTCCTGCGAAAGCAATGCGGACGACGACGAGGGGATTGAAAAGATCAACAGAGATGCGAAAAATAGTTTCACTGCTGTGTTGGTTGGGTCCACGATTGAGCTCCCAAAAGACGGATTCCAAAGTGGCTCGAGTGACTGGCTTATGGGAGGAGGAGATACGACTCGGCACATTCAGACACATCTTGGCTCTATGCCTAGAGCAGAGGACTCGACCAAGAAAAGTTGTGAAATTCAAGTCAAGGAACCCGTGACTCGTTTAAAAACTGTCAACAGCGAAGAAGGGGTAAAAATCGAAAGTGAACAAACAAAGCTGTTTGAACTGAGCGAGAGAAAATCCACAACTCAGTGCGAGGATGTACGTTGTTCCAGCGAATCGAAATGTGGCGCTAATTGTACAAAACTTATTAATGATTTGTCTTCTCCTACTATGTCGGGGGAAGGTGAATCTAACGATGACATTGTTGTTAAAAAGGAAGAACTGCCACAGGAGAAATTAAAAACGCAAGAAAACGATAAGTGCACCAAAGAAAGCGAAGAGGAACAGTTTACCTCGAGGTTAAAAAAGGAACTTGATTTAGACCTGAACTCCGACGAAGAGGATTCTGAGACAGACGCTTATATTCGGTCAGTTGTAAGTAAAATTAACGTGAAACAGGAAGCAGTTATTGAACAGCAATCATGCGGCAAGGAGGATGCACCGCTGTGTTTACGAACGGAGAGTCAAGATGCCGTCTCGCGGCGTTGTCTTTGTGTGTCGAACATTCTTCGTGGACTTTCCTTCGTCCCAGGAAACGACGCGGAAATGTCTCGGCACGCGGGGTTGTTGCTGATCGTCGGCCGGCTGTTATTGCTGCATCATAAACACGCTAAACGAGTTCCTTACCGGCATTCGTATCTTCAAGATGAAATTGAGGTAGAGTGCCCGAGCGACGACCGACATGATTGGTGGTGGTACTGCCTGGAAGGTCTGCGTGAGAACGCCTTGGTGATAACAGCTAATGTGGCGGGTCAGCTTGATCTTGCTCTCTACCCTGAGGCTATCAGTTTGCCTTTGTTGGACGGTTTGCTTCACTGGTTTGTGTGTCCGTCGGCTGCCGCGCAGGACCCTATGCCTACAGCTACTCCAGGAACCTCTCTCTCCCCGAGACAGCTGGTGCTGGAGGCTCTGGCCAAGATGAGCATTCTGGAGTCAAATGTGGACATGATTCTCACCACTCCGCCCTTAACGCGAGTGGACGAATTGTACACCATGTTGGTTCGTCTTGTCGGCGAGAGAGGTAATCCAGTCACTCGCGAACTTGCTCTCGTCCTTCTATCCAACCTTGCACAAGGAGAGAATTCCTTCGTTGGTTTCGGCGACAGCAAAGCTTGTATTTCCATGCTGTTAGAATTTATCGAGGACGCGGCGTCCACCATGAACGCGTATTCATCGGGCAGTGCTCTGGCGCAAGCCGGATTTCATTCGGAGAGTTTCTGCGGTACAAGTGTGGACATGTTACGTCGGGCTGCCTCCACGCTGGTGTGCTTGGCACGTATTCGCTCGAATCGCGCGCTGTTCTTGCCTTTTCAGGAACGAATCTTGAGGCTTGCAGTTCAACGAATCCTGGACAGTATGATCGCCAATCATTTGGCCGAGATTCTCTTCTATTTATCCAGGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2BH40	AT-rich interactive domain-containing protein 1A OS=Mus musculus OX=10090 GN=Arid1a PE=1 SV=1
O14497	AT-rich interactive domain-containing protein 1A OS=Homo sapiens OX=9606 GN=ARID1A PE=1 SV=3
E9Q4N7	AT-rich interactive domain-containing protein 1B OS=Mus musculus OX=10090 GN=Arid1b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004947 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12031 all species →	BAF250_C	SWI/SNF-like complex subunit BAF250/Osa	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021906 all species →	Family	SWI/SNF-like complex subunit BAF250/Osa	Interproscan
IPR033388 all species →	Domain	SWI/SNF-like complex subunit BAF250, C-terminal	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12656 all species →	BRG-1 ASSOCIATED FACTOR 250 BAF250	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016514 all species →	Cellular Component	SWI/SNF complex	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0035060 all species →	Cellular Component	brahma complex	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0071565 all species →	Cellular Component	nBAF complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11653	ARID1; AT-rich interactive domain-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.