Genomic Location: Ap6:31418400...31457387
NR annotation: XP_020620781.1, epithelial cell-transforming sequence 2 oncogene-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.3078 |
| Transcript |
| evm.model.Ap6.3078 |
| Protein |
| evm.model.Ap6.3078 |
| UniProt accession | Description |
|---|---|
| Q008S8 | Epithelial cell-transforming sequence 2 oncogene-like OS=Homo sapiens OX=9606 GN=ECT2L PE=1 SV=2 |
| Q8IX29 | F-box only protein 16 OS=Homo sapiens OX=9606 GN=FBXO16 PE=1 SV=1 |
| Q9QZM9 | F-box only protein 16 OS=Mus musculus OX=10090 GN=Fbxo16 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002132 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12937 all species → | F-box-like | F-box-like | Domain | Interproscan |
| PF00621 all species → | RhoGEF | RhoGEF domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000219 all species → | Domain | Dbl homology (DH) domain | Interproscan |
| IPR001810 all species → | Domain | F-box domain | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR035899 all species → | Homologous_superfamily | Dbl homology (DH) domain superfamily | Interproscan |
| IPR052805 all species → | Family | GEF and Ubiquitin-Proteasome Regulators | Interproscan |
| IPR036047 all species → | Homologous_superfamily | F-box-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46857 all species → | EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005085 all species → | Molecular Function | guanyl-nucleotide exchange factor activity | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
evm.model.Ap6.3078.Transcript abundance of evm.model.Ap6.3078 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
