Gene detail

Detailed information of evm.model.Ap6.3118 in Astrangia poculata

Genomic Location: Ap6:31970461...31974723
NR annotation: XP_020610855.1, reticulocyte binding protein 2 homolog b-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.3118

atggctgaatcaaatcaagaacctatgtccattgaggcatttcgagcaaagaaagcagccgcttcgactccaagtggcaagtcaacaacagcaagcaaactctctccgaacacatcaaatccctccgtttcaacctcaacctcagcactaactcggccagctagcgcaagtaaaacgaattcagcgaggcgatctatgtctactgaaaatctgagtggcagggatgcgccgtcacttgatgaaagacaggagaaggtcaagcttcttcgagaaaaacaggccgaagataggcgaagaaaaaatgaggaacgcagagctgcctttgaagagagaagacgtaaaaaggaggaagacgagaaagaaaggtggtccacgctaaaggatcaggccgctaaacgtaacgtttccaagccaaatgcgtcagcttcaaaacctggcacaggcagaaaactgccaacattaccccaggaaggtagtgctatgcgacctggcagtgctgtggaacgtccatcttcattgccaaagccattgatgaggccttccagcgctacaactgctagaagcccctctcggagcagtgctgatagtttatctggaggctcaacacccaaagaatctcccgctaccacccctgggggcttgcaaccaaaaaaatccctaggggtcagtaagtctgcatcagctagtaatttaaatcgcaggggcagtgggggttctgtgccacagagaccatcttctggaactaagccaaggatgcgttcaacatcaacacattcttcagctctgacattagagaatcaaaactctaaaaaaagtacaagtcgtgaatcattgttaccgcctgcaggaaaattagccaaatctcattctactagttctattcacaaagttggacagcatagaccagcggcagataaaagccacaaaactgaaacaaagcctaaagctggagttactgatgaagcgactgctaaacaggctttggcagaaagaagaaagaaggcaagagaggaggcagagagacaggctgctctggataaggagcgacaggaggcagagcggttgaaaaaagaagaagaagaaagaatacgggctgaagaagaagcgaaagaagaagcaaggatgcgtgagcttgcagagcttcttcgcaagcaggaagaagagaggctgcggattgcagcagaggagaaagagaagcaagagcaggaggaagctgaaagggctgcagctgagaagaagcgtaaagaagaagaagaacagaaaatgagagaggaagaagaaagaaaggcaaaagaagatgaagaaagaaggaaagaagaggaagctgccagactagagaggaaaaggagagtggaacaaatcatgagcagaacaaggcaatctgcaagcccaaccactacagaggaaagcaattcttctgctgcagcaaatcaagagacaaaagacccagaagatacaaaaagaaaggttagtgaaatactgcagaaagtcaaaggagtttcaggaagtcaaaatgcaatgggccaaatggaagatgatgatggttcttcaatgcttcttgccaatgcggaagaagtgcaagagaataacaatgaatttgatacaccaggcacagtgaatgatgaattggaaagtatttcattttctagtatagatacttcaaacaaatcaactttccaacctgtccacacaaatggagtccattcatcttctccacaaggattttatggtgaatcgacaaacaatggtgatgaggtgcatgtgtcgtcatcatcacatttaataactgttgaacaagagtcgacatacatgctgactacaagtagatcaacaagtaatgaacatgaaaaagagactgtgtcatttcaacatagtgaagggccatcgacaatagaggattatggtataaatggaacggatcaagtttctgaaactgccgataaactaccagatacggaagccactgccactgtggcatattcctga

Transcript

evm.model.Ap6.3118

ATGGCTGAATCAAATCAAGAACCTATGTCCATTGAGGCATTTCGAGCAAAGAAAGCAGCCGCTTCGACTCCAAGTGGCAAGTCAACAACAGCAAGCAAACTCTCTCCGAACACATCAAATCCCTCCGTTTCAACCTCAACCTCAGCACTAACTCGGCCAGCTAGCGCAAGTAAAACGAATTCAGCGAGGCGATCTATGTCTACTGAAAATCTGAGTGGCAGGGATGCGCCGTCACTTGATGAAAGACAGGAGAAGGTCAAGCTTCTTCGAGAAAAACAGGCCGAAGATAGGCGAAGAAAAAATGAGGAACGCAGAGCTGCCTTTGAAGAGAGAAGACGTAAAAAGGAGGAAGACGAGAAAGAAAGGTGGTCCACGCTAAAGGATCAGGCCGCTAAACGTAACGTTTCCAAGCCAAATGCGTCAGCTTCAAAACCTGGCACAGGCAGAAAACTGCCAACATTACCCCAGGAAGGTAGTGCTATGCGACCTGGCAGTGCTGTGGAACGTCCATCTTCATTGCCAAAGCCATTGATGAGGCCTTCCAGCGCTACAACTGCTAGAAGCCCCTCTCGGAGCAGTGCTGATAGTTTATCTGGAGGCTCAACACCCAAAGAATCTCCCGCTACCACCCCTGGGGGCTTGCAACCAAAAAAATCCCTAGGGGTCAGTAAGTCTGCATCAGCTAGTAATTTAAATCGCAGGGGCAGTGGGGGTTCTGTGCCACAGAGACCATCTTCTGGAACTAAGCCAAGGATGCGTTCAACATCAACACATTCTTCAGCTCTGACATTAGAGAATCAAAACTCTAAAAAAAGTACAAGTCGTGAATCATTGTTACCGCCTGCAGGAAAATTAGCCAAATCTCATTCTACTAGTTCTATTCACAAAGTTGGACAGCATAGACCAGCGGCAGATAAAAGCCACAAAACTGAAACAAAGCCTAAAGCTGGAGTTACTGATGAAGCGACTGCTAAACAGGCTTTGGCAGAAAGAAGAAAGAAGGCAAGAGAGGAGGCAGAGAGACAGGCTGCTCTGGATAAGGAGCGACAGGAGGCAGAGCGGTTGAAAAAAGAAGAAGAAGAAAGAATACGGGCTGAAGAAGAAGCGAAAGAAGAAGCAAGGATGCGTGAGCTTGCAGAGCTTCTTCGCAAGCAGGAAGAAGAGAGGCTGCGGATTGCAGCAGAGGAGAAAGAGAAGCAAGAGCAGGAGGAAGCTGAAAGGGCTGCAGCTGAGAAGAAGCGTAAAGAAGAAGAAGAACAGAAAATGAGAGAGGAAGAAGAAAGAAAGGCAAAAGAAGATGAAGAAAGAAGGAAAGAAGAGGAAGCTGCCAGACTAGAGAGGAAAAGGAGAGTGGAACAAATCATGAGCAGAACAAGGCAATCTGCAAGCCCAACCACTACAGAGGAAAGCAATTCTTCTGCTGCAGCAAATCAAGAGACAAAAGACCCAGAAGATACAAAAAGAAAGGTTAGTGAAATACTGCAGAAAGTCAAAGGAGTTTCAGGAAGTCAAAATGCAATGGGCCAAATGGAAGATGATGATGGTTCTTCAATGCTTCTTGCCAATGCGGAAGAAGTGCAAGAGAATAACAATGAATTTGATACACCAGGCACAGTGAATGATGAATTGGAAAGTATTTCATTTTCTAGTATAGATACTTCAAACAAATCAACTTTCCAACCTGTCCACACAAATGGAGTCCATTCATCTTCTCCACAAGGATTTTATGGTGAATCGACAAACAATGGTGATGAGGTGCATGTGTCGTCATCATCACATTTAATAACTGTTGAACAAGAGTCGACATACATGCTGACTACAAGTAGATCAACAAGTAATGAACATGAAAAAGAGACTGTGTCATTTCAACATAGTGAAGGGCCATCGACAATAGAGGATTATGGTATAAATGGAACGGATCAAGTTTCTGAAACTGCCGATAAACTACCAGATACGGAAGCCACTGCCACTGTGGCATATTCCTGAAACCAAACAAGGCTTGGCTGAACATAATCCAGAAAGTGTTAACATAGATTTAAATGGAGTAGAAGATGAGGAGTTGCTCTGGCTGCATATAGAGGCCACCATGAGAAAGAGACAGTCTCATGCTGTTGAGACTCTAGAGAACCTTGGTGTTGTTGCCGAAGGTGATGATGATGAGGAGAGTGAAGAGGGCCAGCTCTGGAAGGTGGTAGAAGGAAAGGCGCAGCTGGCTGAGATAGTATGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008479 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05672 all species →	MAP7	MAP7 (E-MAP-115) family	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008604 all species →	Family	Microtubule-associated protein 7 family	Interproscan
IPR051483 all species →	Family	Microtubule-associated protein 7 domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15073 all species →	MICROTUBULE-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.3118.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.