Gene detail

Detailed information of evm.model.Ap6.3120 in Astrangia poculata

Genomic Location: Ap6:31986869...32016129
NR annotation: CAH3120603.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.3120

atgggcagcaccagcagtaaggaagatccggtaattacagatcgactgagggccgaagacttcgtctttacaaagggagctttgataagtctctgtgaagacgactacattcacttgtggaatttacgacaggcacaacctgcccttgtgcagtctttaagatttaatagagaaaaaaaatgtaaaacccacccaggtccagttgtacatataagtggtaatcctgtggaccctaataagttgcttttaggttttgaatctggaacagttgttgtttggtccctcagagggaaaacagcagaacacagatgtatttgttctcagtctgtgatctctgcatattggttgaatgatggaaaacagtttatttgctctcacactgatggtaccctaacagtatggaaccttaaaaacagtgacaaaccagtggacacattaattccacataatgtacaagatccaagagctgttgttgtgttaacgccagtgaaactcttggtgtttgacttactttcatcatctgcaaagccgtcatcatttgaagttccctacacattcaacatacacgagtctccagtgacttgtacacaattttgtagtgattgtcctcgggattttattatggctctggaatcaacagcaagtagccgcacacgtaaaaggcagttacagaggggagaaagcacccaggcatggcccatagctggtggaatcttaggagaatcaccggagtttgctacaggctctgagctcgttatcactggtcattcagatgggtctgtaaagttctgggaggcctcgtcagctgtcttgagatgtctctacaaactgtcaacaagcaaagtatttgagaagaacacaagtcaacccgagagcagtgaaacaaatggtaaagatggccagtctgaaggcaacggcagcacaagcagtgaacagtcaccgccttcaatggttgacattgactgctatgctgtcaacatgatagagctgtgtatcagaagtcggacacttctagtggctggcactagccatgttatagtctaccagtttagcactgtggaagagacactagaatttgtgcaacttgacatcaatcttttgtttgacctgggtatggatttgctaccagactccgaggtccaaagcccgactgaggataaaggagaggaactggtactcagtcccacctcagcctccatgactgtgtcatgtcccactcttacctgtaaaactggtttgtacaagaggtcgcctggatttcagcccactgtctgttgcatgattccatcagttggatcagacacagtaccactcagcaacatggctgttagctcagagtttggagtgatttctatcagcaatggaccctctttagcattggttgatatagttcaaaagaaactcattacagtgctgtcagcccaagatatgtgtgctgtgtcagaatccccgtcatcatcagcaaattcagcaacgatgcctgtgacaactggcatgcctatatcattcactatgaatgctgatggctcagggggggaattccacattgatcttaactcaaaatctgagagaaggaaaagccgtccccctcgaccacctcccccggtaagaaggcttaatagcaggcctgttagtggtggggatcagaacgagaatgaagctgttgatggcatacgaccaagaacaaccagtgtaccaaatttggaaagtggcccccctgacagcatcagctgtgtgcggtttgcctgcaccttcactaaaaagaatgacaatttaatcagtccgtgcttgtgggttggaacagtctttggaaatgtgtttgttgttgtgcttaacctgcctgtcagagaacaaagagagtcgcagcctgtgctaacaataaccacagggacgatatgtcagcccaaagcaggcatgattctcagcatggctatacttgacagtcagggacatctctttccttctccatttcagttctggaaagaaaaagattcacagcacaataagaggaactctttactgacaagggagttacttgacaaacactttgttgttatttgtacagacagagaagccaaggtgtattcattacccacaacccacgctaatcccaagactttctcagaagctaacctcactgacgactcggccgtgttactcaaggcagatgctgttgttgttcaaggtagtagctgcttgttgtgtcttaacagtcttggcaagctgctcgcgttaagcctgccgaacctgtcaccgttattggacgtggaatgctcgttcctcatgaaggactacagatttctcaggacgcttgtgttctctgaggatgcccaagcagttattttgtgttcaccgttcgaaattcagaggctttcaatgtttgcaaggccggggatgctgacagaaaaccagggatcattattccgtgcagtagagacacctgaacctccgagcaaaggtttctttagcagcttgttcagcactgctgcttcgccacttgatagagagcagctctttggcacagagagcgggaatgcgtctcgtagtttgactaatcggttcaatggccctggaatggagaagctgcaagagacgtccagcggattagctggtgttgtggccaggaacaaacaggctcttatggagagaggtgaaaaactctcggagctggagatgaagactggagaaatgaatattcgtgccaaggccttcgcggacgccgcccatcaactgtcgcgccaatacaaggataagaagtggtaccagctgataaagcaagctcaggagtataagaagcagtgtgagctcttaacaaagcaggaagcagagatgaaatcacagcttgcaatgtatgcagagcgatttgaagaattccaaaaaacccttaacaagagcaatgaagtcttttcaacttttaagaaggaaatggataagatgacaaagacaattaaaaaacttgaaaaggaaaaactaacgtggaaaacgaagtgcgagaatggtaaccggtcattggtgcaaatggtggatgagcgtgaaaaacagaaaaacgaaatggccgctctgcgattaaagaatgaaaagcttgaaaacctttgccgagcgctgcacaaaggagctaaagtaacagccggtgacatcgatcagaccaaggaaaccagtaccgcgaattctgataaagaaatcgaatcttcatctggtgaagagagaatacgtgatgaaaacgaacaaagcacaagtgccgcagaaatatcgagtaaacacacacttgaagcgtcagaggatgtaacaggcgaggaaaacaaaaaacacagtgaagaacaacactcgaagaattctgatggcgactcgagtaatggagttcaagaacccggggctgaaaattcgaatgaattcgacgattctccgactgattccgagacaacgccgaccgtgcccgctgatacaccgagaaattccgaagaagttccggcggagtccgaaaaagtgagttccaccgaaactgcttcagttgtgaatgacgagagtactagccctgatgttgtagacagttga

Transcript

evm.model.Ap6.3120

ATGGGCAGCACCAGCAGTAAGGAAGATCCGGTAATTACAGATCGACTGAGGGCCGAAGACTTCGTCTTTACAAAGGGAGCTTTGATAAGTCTCTGTGAAGACGACTACATTCACTTGTGGAATTTACGACAGGCACAACCTGCCCTTGTGCAGTCTTTAAGATTTAATAGAGAAAAAAAATGTAAAACCCACCCAGGTCCAGTTGTACATATAAGTGGTAATCCTGTGGACCCTAATAAGTTGCTTTTAGGTTTTGAATCTGGAACAGTTGTTGTTTGGTCCCTCAGAGGGAAAACAGCAGAACACAGATGTATTTGTTCTCAGTCTGTGATCTCTGCATATTGGTTGAATGATGGAAAACAGTTTATTTGCTCTCACACTGATGGTACCCTAACAGTATGGAACCTTAAAAACAGTGACAAACCAGTGGACACATTAATTCCACATAATGTACAAGATCCAAGAGCTGTTGTTGTGTTAACGCCAGTGAAACTCTTGGTGTTTGACTTACTTTCATCATCTGCAAAGCCGTCATCATTTGAAGTTCCCTACACATTCAACATACACGAGTCTCCAGTGACTTGTACACAATTTTGTAGTGATTGTCCTCGGGATTTTATTATGGCTCTGGAATCAACAGCAAGTAGCCGCACACGTAAAAGGCAGTTACAGAGGGGAGAAAGCACCCAGGCATGGCCCATAGCTGGTGGAATCTTAGGAGAATCACCGGAGTTTGCTACAGGCTCTGAGCTCGTTATCACTGGTCATTCAGATGGGTCTGTAAAGTTCTGGGAGGCCTCGTCAGCTGTCTTGAGATGTCTCTACAAACTGTCAACAAGCAAAGTATTTGAGAAGAACACAAGTCAACCCGAGAGCAGTGAAACAAATGGTAAAGATGGCCAGTCTGAAGGCAACGGCAGCACAAGCAGTGAACAGTCACCGCCTTCAATGGTTGACATTGACTGCTATGCTGTCAACATGATAGAGCTGTGTATCAGAAGTCGGACACTTCTAGTGGCTGGCACTAGCCATGTTATAGTCTACCAGTTTAGCACTGTGGAAGAGACACTAGAATTTGTGCAACTTGACATCAATCTTTTGTTTGACCTGGGTATGGATTTGCTACCAGACTCCGAGGTCCAAAGCCCGACTGAGGATAAAGGAGAGGAACTGGTACTCAGTCCCACCTCAGCCTCCATGACTGTGTCATGTCCCACTCTTACCTGTAAAACTGGTTTGTACAAGAGGTCGCCTGGATTTCAGCCCACTGTCTGTTGCATGATTCCATCAGTTGGATCAGACACAGTACCACTCAGCAACATGGCTGTTAGCTCAGAGTTTGGAGTGATTTCTATCAGCAATGGACCCTCTTTAGCATTGGTTGATATAGTTCAAAAGAAACTCATTACAGTGCTGTCAGCCCAAGATATGTGTGCTGTGTCAGAATCCCCGTCATCATCAGCAAATTCAGCAACGATGCCTGTGACAACTGGCATGCCTATATCATTCACTATGAATGCTGATGGCTCAGGGGGGGAATTCCACATTGATCTTAACTCAAAATCTGAGAGAAGGAAAAGCCGTCCCCCTCGACCACCTCCCCCGGTAAGAAGGCTTAATAGCAGGCCTGTTAGTGGTGGGGATCAGAACGAGAATGAAGCTGTTGATGGCATACGACCAAGAACAACCAGTGTACCAAATTTGGAAAGTGGCCCCCCTGACAGCATCAGCTGTGTGCGGTTTGCCTGCACCTTCACTAAAAAGAATGACAATTTAATCAGTCCGTGCTTGTGGGTTGGAACAGTCTTTGGAAATGTGTTTGTTGTTGTGCTTAACCTGCCTGTCAGAGAACAAAGAGAGTCGCAGCCTGTGCTAACAATAACCACAGGGACGATATGTCAGCCCAAAGCAGGCATGATTCTCAGCATGGCTATACTTGACAGTCAGGGACATCTCTTTCCTTCTCCATTTCAGTTCTGGAAAGAAAAAGATTCACAGCACAATAAGAGGAACTCTTTACTGACAAGGGAGTTACTTGACAAACACTTTGTTGTTATTTGTACAGACAGAGAAGCCAAGGTGTATTCATTACCCACAACCCACGCTAATCCCAAGACTTTCTCAGAAGCTAACCTCACTGACGACTCGGCCGTGTTACTCAAGGCAGATGCTGTTGTTGTTCAAGGTAGTAGCTGCTTGTTGTGTCTTAACAGTCTTGGCAAGCTGCTCGCGTTAAGCCTGCCGAACCTGTCACCGTTATTGGACGTGGAATGCTCGTTCCTCATGAAGGACTACAGATTTCTCAGGACGCTTGTGTTCTCTGAGGATGCCCAAGCAGTTATTTTGTGTTCACCGTTCGAAATTCAGAGGCTTTCAATGTTTGCAAGGCCGGGGATGCTGACAGAAAACCAGGGATCATTATTCCGTGCAGTAGAGACACCTGAACCTCCGAGCAAAGGTTTCTTTAGCAGCTTGTTCAGCACTGCTGCTTCGCCACTTGATAGAGAGCAGCTCTTTGGCACAGAGAGCGGGAATGCGTCTCGTAGTTTGACTAATCGGTTCAATGGCCCTGGAATGGAGAAGCTGCAAGAGACGTCCAGCGGATTAGCTGGTGTTGTGGCCAGGAACAAACAGGCTCTTATGGAGAGAGGTGAAAAACTCTCGGAGCTGGAGATGAAGACTGGAGAAATGAATATTCGTGCCAAGGCCTTCGCGGACGCCGCCCATCAACTGTCGCGCCAATACAAGGATAAGAAGTGGTACCAGCTGATAAAGCAAGCTCAGGAGTATAAGAAGCAGTGTGAGCTCTTAACAAAGCAGGAAGCAGAGATGAAATCACAGCTTGCAATGTATGCAGAGCGATTTGAAGAATTCCAAAAAACCCTTAACAAGAGCAATGAAGTCTTTTCAACTTTTAAGAAGGAAATGGATAAGATGACAAAGACAATTAAAAAACTTGAAAAGGAAAAACTAACGTGGAAAACGAAGTGCGAGAATGGTAACCGGTCATTGGTGCAAATGGTGGATGAGCGTGAAAAACAGAAAAACGAAATGGCCGCTCTGCGATTAAAGAATGAAAAGCTTGAAAACCTTTGCCGAGCGCTGCACAAAGGAGCTAAAGTAACAGCCGGTGACATCGATCAGACCAAGGAAACCAGTACCGCGAATTCTGATAAAGAAATCGAATCTTCATCTGGTGAAGAGAGAATACGTGATGAAAACGAACAAAGCACAAGTGCCGCAGAAATATCGAGTAAACACACACTTGAAGCGTCAGAGGATGTAACAGGCGAGGAAAACAAAAAACACAGTGAAGAACAACACTCGAAGAATTCTGATGGCGACTCGAGTAATGGAGTTCAAGAACCCGGGGCTGAAAATTCGAATGAATTCGACGATTCTCCGACTGATTCCGAGACAACGCCGACCGTGCCCGCTGATACACCGAGAAATTCCGAAGAAGTTCCGGCGGAGTCCGAAAAAGTGAGTTCCACCGAAACTGCTTCAGTTGTGAATGACGAGAGTACTAGCCCTGATGTTGTAGACAGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WU70	Syntaxin-binding protein 5 OS=Rattus norvegicus OX=10116 GN=Stxbp5 PE=1 SV=1
Q5T5C0	Syntaxin-binding protein 5 OS=Homo sapiens OX=9606 GN=STXBP5 PE=1 SV=1
Q8K400	Syntaxin-binding protein 5 OS=Mus musculus OX=10090 GN=Stxbp5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004407 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00957 all species →	Synaptobrevin	Synaptobrevin	Family	Interproscan
PF09728 all species →	Taxilin	Myosin-like coiled-coil protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042855 all species →	Domain	v-SNARE, coiled-coil homology domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR026183 all species →	Family	Taxilin family	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR000664 all species →	Family	Lethal(2) giant larvae protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10241 all species →	LETHAL 2 GIANT LARVAE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0017157 all species →	Biological Process	regulation of exocytosis	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0045159 all species →	Molecular Function	myosin II binding	Interproscan
GO:0050708 all species →	Biological Process	regulation of protein secretion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14318	NUP88; nuclear pore complex protein Nup88	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.